Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19450 and ABID97_RS19455 are separated by 46 nucleotides ABID97_RS19455 and ABID97_RS19460 overlap by 4 nucleotides ABID97_RS19460 and ABID97_RS19465 overlap by 4 nucleotides
ABID97_RS19450: ABID97_RS19450 - tripartite tricarboxylate transporter substrate binding protein, at 4,015,586 to 4,016,563
_RS19450
ABID97_RS19455: ABID97_RS19455 - VOC family protein, at 4,016,610 to 4,016,990
_RS19455
ABID97_RS19460: ABID97_RS19460 - hydroxymethylglutaryl-CoA lyase, at 4,016,987 to 4,017,970
_RS19460
ABID97_RS19465: ABID97_RS19465 - CoA transferase, at 4,017,967 to 4,019,142
_RS19465
Position (kb) 4016
4017 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4015.677 kb on + strand at 4015.678 kb on - strand at 4015.678 kb on - strand at 4016.008 kb on - strand, within ABID97_RS19450 at 4016.094 kb on + strand, within ABID97_RS19450 at 4016.094 kb on + strand, within ABID97_RS19450 at 4016.274 kb on + strand, within ABID97_RS19450 at 4016.275 kb on - strand, within ABID97_RS19450 at 4016.302 kb on - strand, within ABID97_RS19450 at 4016.584 kb on + strand at 4016.663 kb on - strand, within ABID97_RS19455 at 4016.663 kb on - strand, within ABID97_RS19455 at 4017.089 kb on + strand, within ABID97_RS19460 at 4017.735 kb on + strand, within ABID97_RS19460 at 4017.736 kb on - strand, within ABID97_RS19460 at 4017.736 kb on - strand, within ABID97_RS19460 at 4017.863 kb on + strand, within ABID97_RS19460 at 4017.863 kb on + strand, within ABID97_RS19460 at 4017.864 kb on - strand, within ABID97_RS19460
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 4,015,677 + +0.4 4,015,678 - -2.5 4,015,678 - +0.2 4,016,008 - ABID97_RS19450 0.43 -1.9 4,016,094 + ABID97_RS19450 0.52 -0.8 4,016,094 + ABID97_RS19450 0.52 -1.2 4,016,274 + ABID97_RS19450 0.70 -0.1 4,016,275 - ABID97_RS19450 0.70 -0.9 4,016,302 - ABID97_RS19450 0.73 -0.1 4,016,584 + +0.2 4,016,663 - ABID97_RS19455 0.14 +0.5 4,016,663 - ABID97_RS19455 0.14 +0.5 4,017,089 + ABID97_RS19460 0.10 +0.6 4,017,735 + ABID97_RS19460 0.76 +0.4 4,017,736 - ABID97_RS19460 0.76 +2.1 4,017,736 - ABID97_RS19460 0.76 +0.2 4,017,863 + ABID97_RS19460 0.89 +0.3 4,017,863 + ABID97_RS19460 0.89 +0.7 4,017,864 - ABID97_RS19460 0.89 +0.6
Or see this region's nucleotide sequence