Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17855 and ABID97_RS17860 are separated by 30 nucleotides ABID97_RS17860 and ABID97_RS17865 are separated by 16 nucleotides ABID97_RS17865 and ABID97_RS17870 are separated by 8 nucleotides ABID97_RS17870 and ABID97_RS17875 are separated by 62 nucleotides
ABID97_RS17855: ABID97_RS17855 - peptidylprolyl isomerase, at 3,686,641 to 3,687,186
_RS17855
ABID97_RS17860: ABID97_RS17860 - peptidylprolyl isomerase, at 3,687,217 to 3,687,729
_RS17860
ABID97_RS17865: ABID97_RS17865 - UDP-2,3-diacylglucosamine diphosphatase, at 3,687,746 to 3,688,528
_RS17865
ABID97_RS17870: ABID97_RS17870 - M90 family metallopeptidase, at 3,688,537 to 3,689,328
_RS17870
ABID97_RS17875: ABID97_RS17875 - DUF349 domain-containing protein, at 3,689,391 to 3,692,264
_RS17875
Position (kb) 3687
3688
3689 Strain fitness (log2 ratio) -1
0
1
2
3 at 3686.785 kb on + strand, within ABID97_RS17855 at 3686.804 kb on - strand, within ABID97_RS17855 at 3686.939 kb on - strand, within ABID97_RS17855 at 3687.044 kb on - strand, within ABID97_RS17855 at 3687.050 kb on - strand, within ABID97_RS17855 at 3687.184 kb on + strand at 3687.253 kb on + strand at 3687.319 kb on + strand, within ABID97_RS17860 at 3687.319 kb on + strand, within ABID97_RS17860 at 3687.319 kb on + strand, within ABID97_RS17860 at 3687.319 kb on + strand, within ABID97_RS17860 at 3687.319 kb on + strand, within ABID97_RS17860 at 3687.472 kb on + strand, within ABID97_RS17860 at 3688.527 kb on - strand at 3688.796 kb on - strand, within ABID97_RS17870 at 3688.796 kb on - strand, within ABID97_RS17870 at 3688.871 kb on + strand, within ABID97_RS17870 at 3688.871 kb on + strand, within ABID97_RS17870 at 3688.871 kb on + strand, within ABID97_RS17870 at 3688.872 kb on - strand, within ABID97_RS17870 at 3688.882 kb on + strand, within ABID97_RS17870 at 3688.883 kb on - strand, within ABID97_RS17870 at 3688.883 kb on - strand, within ABID97_RS17870 at 3688.979 kb on - strand, within ABID97_RS17870 at 3689.125 kb on + strand, within ABID97_RS17870 at 3689.194 kb on + strand, within ABID97_RS17870 at 3689.242 kb on + strand, within ABID97_RS17870 at 3689.392 kb on + strand at 3689.392 kb on + strand at 3689.392 kb on + strand at 3689.392 kb on + strand at 3689.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 3,686,785 + ABID97_RS17855 0.26 +0.2 3,686,804 - ABID97_RS17855 0.30 +0.4 3,686,939 - ABID97_RS17855 0.55 +1.8 3,687,044 - ABID97_RS17855 0.74 -1.0 3,687,050 - ABID97_RS17855 0.75 -0.1 3,687,184 + +1.1 3,687,253 + +0.7 3,687,319 + ABID97_RS17860 0.20 +1.1 3,687,319 + ABID97_RS17860 0.20 +0.7 3,687,319 + ABID97_RS17860 0.20 +0.7 3,687,319 + ABID97_RS17860 0.20 +1.6 3,687,319 + ABID97_RS17860 0.20 +1.2 3,687,472 + ABID97_RS17860 0.50 +3.0 3,688,527 - +0.2 3,688,796 - ABID97_RS17870 0.33 -0.0 3,688,796 - ABID97_RS17870 0.33 -0.8 3,688,871 + ABID97_RS17870 0.42 -1.3 3,688,871 + ABID97_RS17870 0.42 +2.2 3,688,871 + ABID97_RS17870 0.42 -0.4 3,688,872 - ABID97_RS17870 0.42 -0.4 3,688,882 + ABID97_RS17870 0.44 +0.2 3,688,883 - ABID97_RS17870 0.44 +0.2 3,688,883 - ABID97_RS17870 0.44 +0.2 3,688,979 - ABID97_RS17870 0.56 +1.5 3,689,125 + ABID97_RS17870 0.74 +0.4 3,689,194 + ABID97_RS17870 0.83 -0.9 3,689,242 + ABID97_RS17870 0.89 +0.3 3,689,392 + -0.1 3,689,392 + +0.5 3,689,392 + +1.6 3,689,392 + -0.2 3,689,393 - +0.0
Or see this region's nucleotide sequence