Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17495

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17485 and ABID97_RS17490 are separated by 125 nucleotidesABID97_RS17490 and ABID97_RS17495 are separated by 52 nucleotidesABID97_RS17495 and ABID97_RS17500 are separated by 101 nucleotides ABID97_RS17485: ABID97_RS17485 - GntR family transcriptional regulator, at 3,612,847 to 3,613,515 _RS17485 ABID97_RS17490: ABID97_RS17490 - prolipoprotein diacylglyceryl transferase, at 3,613,641 to 3,614,462 _RS17490 ABID97_RS17495: ABID97_RS17495 - LysR family transcriptional regulator, at 3,614,515 to 3,615,453 _RS17495 ABID97_RS17500: ABID97_RS17500 - dihydroxy-acid dehydratase, at 3,615,555 to 3,617,249 _RS17500 Position (kb) 3614 3615 3616Strain fitness (log2 ratio) -1 0 1at 3613.539 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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3,613,539 + +1.2

Or see this region's nucleotide sequence