Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17090 and ABID97_RS17095 are separated by 199 nucleotides ABID97_RS17095 and ABID97_RS17100 are separated by 8 nucleotides ABID97_RS17100 and ABID97_RS17105 overlap by 29 nucleotides
ABID97_RS17090: ABID97_RS17090 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 3,532,055 to 3,533,239
_RS17090
ABID97_RS17095: ABID97_RS17095 - RNA methyltransferase, at 3,533,439 to 3,534,233
_RS17095
ABID97_RS17100: ABID97_RS17100 - ribonuclease HII, at 3,534,242 to 3,534,961
_RS17100
ABID97_RS17105: ABID97_RS17105 - lipid-A-disaccharide synthase, at 3,534,933 to 3,536,084
_RS17105
Position (kb) 3533
3534
3535 Strain fitness (log2 ratio) -1
0
1 at 3533.258 kb on - strand at 3533.401 kb on - strand at 3533.424 kb on + strand at 3533.424 kb on + strand at 3533.425 kb on - strand at 3533.425 kb on - strand at 3534.438 kb on + strand, within ABID97_RS17100 at 3534.439 kb on - strand, within ABID97_RS17100 at 3534.439 kb on - strand, within ABID97_RS17100 at 3534.463 kb on - strand, within ABID97_RS17100
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 3,533,258 - +0.5 3,533,401 - -0.2 3,533,424 + -0.5 3,533,424 + -0.2 3,533,425 - +0.1 3,533,425 - -0.3 3,534,438 + ABID97_RS17100 0.27 +0.8 3,534,439 - ABID97_RS17100 0.27 -0.3 3,534,439 - ABID97_RS17100 0.27 -0.3 3,534,463 - ABID97_RS17100 0.31 -0.3
Or see this region's nucleotide sequence