Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17065

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17055 and ABID97_RS17060 are separated by 41 nucleotidesABID97_RS17060 and ABID97_RS17065 are separated by 54 nucleotidesABID97_RS17065 and ABID97_RS17070 are separated by 19 nucleotidesABID97_RS17070 and ABID97_RS17075 are separated by 63 nucleotides ABID97_RS17055: ABID97_RS17055 - YhbY family RNA-binding protein, at 3,525,106 to 3,525,585 _RS17055 ABID97_RS17060: ABID97_RS17060 - glycosyltransferase, at 3,525,627 to 3,526,346 _RS17060 ABID97_RS17065: ABID97_RS17065 - DUF4149 domain-containing protein, at 3,526,401 to 3,526,817 _RS17065 ABID97_RS17070: ABID97_RS17070 - transcription elongation factor GreA, at 3,526,837 to 3,527,313 _RS17070 ABID97_RS17075: ABID97_RS17075 - Kdo hydroxylase family protein, at 3,527,377 to 3,528,246 _RS17075 Position (kb) 3526 3527Strain fitness (log2 ratio) -2 -1 0 1 2at 3525.445 kb on + strand, within ABID97_RS17055at 3525.445 kb on + strand, within ABID97_RS17055at 3526.096 kb on - strand, within ABID97_RS17060at 3526.465 kb on + strand, within ABID97_RS17065at 3526.465 kb on + strand, within ABID97_RS17065at 3526.465 kb on + strand, within ABID97_RS17065at 3526.465 kb on + strand, within ABID97_RS17065at 3526.466 kb on - strand, within ABID97_RS17065at 3526.466 kb on - strand, within ABID97_RS17065at 3526.534 kb on + strand, within ABID97_RS17065at 3526.534 kb on + strand, within ABID97_RS17065at 3526.534 kb on + strand, within ABID97_RS17065at 3526.535 kb on - strand, within ABID97_RS17065at 3526.535 kb on - strand, within ABID97_RS17065at 3526.535 kb on - strand, within ABID97_RS17065at 3526.569 kb on + strand, within ABID97_RS17065at 3526.570 kb on - strand, within ABID97_RS17065at 3526.570 kb on - strand, within ABID97_RS17065at 3526.865 kb on + strandat 3526.866 kb on - strandat 3527.171 kb on + strand, within ABID97_RS17070at 3527.327 kb on + strandat 3527.327 kb on + strandat 3527.438 kb on + strandat 3527.438 kb on + strandat 3527.438 kb on + strandat 3527.439 kb on - strandat 3527.439 kb on - strandat 3527.480 kb on + strand, within ABID97_RS17075at 3527.480 kb on + strand, within ABID97_RS17075at 3527.480 kb on + strand, within ABID97_RS17075at 3527.480 kb on + strand, within ABID97_RS17075at 3527.481 kb on - strand, within ABID97_RS17075at 3527.481 kb on - strand, within ABID97_RS17075at 3527.481 kb on - strand, within ABID97_RS17075at 3527.481 kb on - strand, within ABID97_RS17075at 3527.481 kb on - strand, within ABID97_RS17075at 3527.580 kb on - strand, within ABID97_RS17075at 3527.630 kb on + strand, within ABID97_RS17075at 3527.693 kb on + strand, within ABID97_RS17075at 3527.693 kb on + strand, within ABID97_RS17075at 3527.694 kb on - strand, within ABID97_RS17075at 3527.694 kb on - strand, within ABID97_RS17075at 3527.814 kb on - strand, within ABID97_RS17075at 3527.814 kb on - strand, within ABID97_RS17075

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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3,525,445 + ABID97_RS17055 0.71 -0.9
3,525,445 + ABID97_RS17055 0.71 +1.7
3,526,096 - ABID97_RS17060 0.65 +1.2
3,526,465 + ABID97_RS17065 0.15 -0.7
3,526,465 + ABID97_RS17065 0.15 -0.0
3,526,465 + ABID97_RS17065 0.15 -0.7
3,526,465 + ABID97_RS17065 0.15 -0.7
3,526,466 - ABID97_RS17065 0.16 +0.5
3,526,466 - ABID97_RS17065 0.16 +0.5
3,526,534 + ABID97_RS17065 0.32 -1.1
3,526,534 + ABID97_RS17065 0.32 -2.1
3,526,534 + ABID97_RS17065 0.32 -0.6
3,526,535 - ABID97_RS17065 0.32 -1.0
3,526,535 - ABID97_RS17065 0.32 -0.6
3,526,535 - ABID97_RS17065 0.32 -0.1
3,526,569 + ABID97_RS17065 0.40 +0.6
3,526,570 - ABID97_RS17065 0.41 -1.6
3,526,570 - ABID97_RS17065 0.41 +0.2
3,526,865 + -0.2
3,526,866 - +1.4
3,527,171 + ABID97_RS17070 0.70 +0.6
3,527,327 + -0.6
3,527,327 + -1.5
3,527,438 + +0.1
3,527,438 + +0.2
3,527,438 + +0.8
3,527,439 - +0.8
3,527,439 - -0.4
3,527,480 + ABID97_RS17075 0.12 +1.0
3,527,480 + ABID97_RS17075 0.12 +0.6
3,527,480 + ABID97_RS17075 0.12 +1.0
3,527,480 + ABID97_RS17075 0.12 +1.2
3,527,481 - ABID97_RS17075 0.12 +1.4
3,527,481 - ABID97_RS17075 0.12 +0.6
3,527,481 - ABID97_RS17075 0.12 -0.4
3,527,481 - ABID97_RS17075 0.12 +2.4
3,527,481 - ABID97_RS17075 0.12 +0.9
3,527,580 - ABID97_RS17075 0.23 +1.9
3,527,630 + ABID97_RS17075 0.29 +2.1
3,527,693 + ABID97_RS17075 0.36 +0.1
3,527,693 + ABID97_RS17075 0.36 +1.0
3,527,694 - ABID97_RS17075 0.36 +0.3
3,527,694 - ABID97_RS17075 0.36 +0.9
3,527,814 - ABID97_RS17075 0.50 +0.5
3,527,814 - ABID97_RS17075 0.50 +0.5

Or see this region's nucleotide sequence