Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16090

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16080 and ABID97_RS16085 are separated by 132 nucleotidesABID97_RS16085 and ABID97_RS16090 are separated by 38 nucleotidesABID97_RS16090 and ABID97_RS16095 are separated by 178 nucleotidesABID97_RS16095 and ABID97_RS16100 are separated by 23 nucleotidesABID97_RS16100 and ABID97_RS16105 are separated by 287 nucleotides ABID97_RS16080: ABID97_RS16080 - AraC family transcriptional regulator, at 3,331,128 to 3,332,138 _RS16080 ABID97_RS16085: ABID97_RS16085 - L,D-transpeptidase, at 3,332,271 to 3,332,909 _RS16085 ABID97_RS16090: ABID97_RS16090 - proteophosphoglycan ppg4, at 3,332,948 to 3,333,244 _RS16090 ABID97_RS16095: ABID97_RS16095 - hypothetical protein, at 3,333,423 to 3,333,662 _RS16095 ABID97_RS16100: ABID97_RS16100 - hypothetical protein, at 3,333,686 to 3,333,946 _RS16100 ABID97_RS16105: ABID97_RS16105 - type IV pilin protein, at 3,334,234 to 3,334,638 _RS16105 Position (kb) 3332 3333 3334Strain fitness (log2 ratio) -2 -1 0 1at 3332.101 kb on + strandat 3332.102 kb on - strandat 3332.102 kb on - strandat 3332.102 kb on - strandat 3332.182 kb on - strandat 3332.182 kb on - strandat 3332.326 kb on - strandat 3332.332 kb on + strandat 3332.333 kb on - strandat 3332.333 kb on - strandat 3332.333 kb on - strandat 3332.333 kb on - strandat 3332.372 kb on - strand, within ABID97_RS16085at 3332.372 kb on - strand, within ABID97_RS16085at 3332.512 kb on + strand, within ABID97_RS16085at 3333.324 kb on - strandat 3333.370 kb on + strandat 3334.165 kb on + strandat 3334.165 kb on + strandat 3334.166 kb on - strandat 3334.166 kb on - strandat 3334.166 kb on - strandat 3334.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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3,332,101 + -1.0
3,332,102 - +0.7
3,332,102 - -0.4
3,332,102 - -2.2
3,332,182 - -1.1
3,332,182 - -0.1
3,332,326 - -0.8
3,332,332 + +0.3
3,332,333 - +0.2
3,332,333 - -0.9
3,332,333 - +0.0
3,332,333 - -0.8
3,332,372 - ABID97_RS16085 0.16 -0.3
3,332,372 - ABID97_RS16085 0.16 +1.7
3,332,512 + ABID97_RS16085 0.38 +0.9
3,333,324 - +0.8
3,333,370 + -0.9
3,334,165 + -0.6
3,334,165 + +0.3
3,334,166 - -1.1
3,334,166 - -0.3
3,334,166 - +0.0
3,334,166 - +0.1

Or see this region's nucleotide sequence