Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16060 and ABID97_RS16065 are separated by 24 nucleotides ABID97_RS16065 and ABID97_RS16070 overlap by 4 nucleotides ABID97_RS16070 and ABID97_RS16075 are separated by 228 nucleotides
ABID97_RS16060: ABID97_RS16060 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 3,326,195 to 3,327,499
_RS16060
ABID97_RS16065: ABID97_RS16065 - PDR/VanB family oxidoreductase, at 3,327,524 to 3,328,489
_RS16065
ABID97_RS16070: ABID97_RS16070 - dienelactone hydrolase family protein, at 3,328,486 to 3,329,745
_RS16070
ABID97_RS16075: ABID97_RS16075 - ABC transporter substrate-binding protein, at 3,329,974 to 3,331,131
_RS16075
Position (kb)
3328
3329
3330 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3327.687 kb on + strand, within ABID97_RS16065 at 3328.030 kb on + strand, within ABID97_RS16065 at 3328.055 kb on + strand, within ABID97_RS16065 at 3328.893 kb on - strand, within ABID97_RS16070 at 3328.953 kb on - strand, within ABID97_RS16070 at 3328.953 kb on - strand, within ABID97_RS16070 at 3329.009 kb on + strand, within ABID97_RS16070 at 3329.009 kb on + strand, within ABID97_RS16070 at 3329.046 kb on - strand, within ABID97_RS16070 at 3329.168 kb on + strand, within ABID97_RS16070 at 3329.168 kb on + strand, within ABID97_RS16070 at 3329.168 kb on + strand, within ABID97_RS16070 at 3329.168 kb on + strand, within ABID97_RS16070 at 3329.169 kb on - strand, within ABID97_RS16070 at 3329.169 kb on - strand, within ABID97_RS16070 at 3329.318 kb on + strand, within ABID97_RS16070 at 3329.318 kb on + strand, within ABID97_RS16070 at 3329.319 kb on - strand, within ABID97_RS16070 at 3329.321 kb on + strand, within ABID97_RS16070 at 3329.363 kb on + strand, within ABID97_RS16070 at 3329.526 kb on - strand, within ABID97_RS16070 at 3329.583 kb on - strand, within ABID97_RS16070 at 3329.583 kb on - strand, within ABID97_RS16070 at 3329.735 kb on + strand at 3329.891 kb on + strand at 3329.892 kb on - strand at 3330.305 kb on - strand, within ABID97_RS16075 at 3330.334 kb on + strand, within ABID97_RS16075 at 3330.359 kb on - strand, within ABID97_RS16075 at 3330.391 kb on + strand, within ABID97_RS16075 at 3330.391 kb on + strand, within ABID97_RS16075 at 3330.461 kb on - strand, within ABID97_RS16075 at 3330.530 kb on - strand, within ABID97_RS16075 at 3330.601 kb on + strand, within ABID97_RS16075 at 3330.601 kb on + strand, within ABID97_RS16075
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 3,327,687 + ABID97_RS16065 0.17 -1.7 3,328,030 + ABID97_RS16065 0.52 -1.0 3,328,055 + ABID97_RS16065 0.55 +0.4 3,328,893 - ABID97_RS16070 0.32 +0.6 3,328,953 - ABID97_RS16070 0.37 +2.4 3,328,953 - ABID97_RS16070 0.37 -2.4 3,329,009 + ABID97_RS16070 0.42 -0.3 3,329,009 + ABID97_RS16070 0.42 +0.2 3,329,046 - ABID97_RS16070 0.44 -1.4 3,329,168 + ABID97_RS16070 0.54 -0.3 3,329,168 + ABID97_RS16070 0.54 +0.7 3,329,168 + ABID97_RS16070 0.54 -0.6 3,329,168 + ABID97_RS16070 0.54 -1.4 3,329,169 - ABID97_RS16070 0.54 +2.2 3,329,169 - ABID97_RS16070 0.54 +0.4 3,329,318 + ABID97_RS16070 0.66 +1.2 3,329,318 + ABID97_RS16070 0.66 +0.8 3,329,319 - ABID97_RS16070 0.66 +0.0 3,329,321 + ABID97_RS16070 0.66 +0.2 3,329,363 + ABID97_RS16070 0.70 -0.2 3,329,526 - ABID97_RS16070 0.83 +0.1 3,329,583 - ABID97_RS16070 0.87 -0.4 3,329,583 - ABID97_RS16070 0.87 -0.1 3,329,735 + +0.4 3,329,891 + -0.2 3,329,892 - +0.7 3,330,305 - ABID97_RS16075 0.29 -1.8 3,330,334 + ABID97_RS16075 0.31 +0.4 3,330,359 - ABID97_RS16075 0.33 +0.1 3,330,391 + ABID97_RS16075 0.36 +0.2 3,330,391 + ABID97_RS16075 0.36 -0.9 3,330,461 - ABID97_RS16075 0.42 -0.7 3,330,530 - ABID97_RS16075 0.48 -0.4 3,330,601 + ABID97_RS16075 0.54 -0.7 3,330,601 + ABID97_RS16075 0.54 -0.3
Or see this region's nucleotide sequence