Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16070

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16060 and ABID97_RS16065 are separated by 24 nucleotidesABID97_RS16065 and ABID97_RS16070 overlap by 4 nucleotidesABID97_RS16070 and ABID97_RS16075 are separated by 228 nucleotides ABID97_RS16060: ABID97_RS16060 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 3,326,195 to 3,327,499 _RS16060 ABID97_RS16065: ABID97_RS16065 - PDR/VanB family oxidoreductase, at 3,327,524 to 3,328,489 _RS16065 ABID97_RS16070: ABID97_RS16070 - dienelactone hydrolase family protein, at 3,328,486 to 3,329,745 _RS16070 ABID97_RS16075: ABID97_RS16075 - ABC transporter substrate-binding protein, at 3,329,974 to 3,331,131 _RS16075 Position (kb) 3328 3329 3330Strain fitness (log2 ratio) -2 -1 0 1 2at 3327.687 kb on + strand, within ABID97_RS16065at 3328.030 kb on + strand, within ABID97_RS16065at 3328.055 kb on + strand, within ABID97_RS16065at 3328.893 kb on - strand, within ABID97_RS16070at 3328.953 kb on - strand, within ABID97_RS16070at 3328.953 kb on - strand, within ABID97_RS16070at 3329.009 kb on + strand, within ABID97_RS16070at 3329.009 kb on + strand, within ABID97_RS16070at 3329.046 kb on - strand, within ABID97_RS16070at 3329.168 kb on + strand, within ABID97_RS16070at 3329.168 kb on + strand, within ABID97_RS16070at 3329.168 kb on + strand, within ABID97_RS16070at 3329.168 kb on + strand, within ABID97_RS16070at 3329.169 kb on - strand, within ABID97_RS16070at 3329.169 kb on - strand, within ABID97_RS16070at 3329.318 kb on + strand, within ABID97_RS16070at 3329.318 kb on + strand, within ABID97_RS16070at 3329.319 kb on - strand, within ABID97_RS16070at 3329.321 kb on + strand, within ABID97_RS16070at 3329.363 kb on + strand, within ABID97_RS16070at 3329.526 kb on - strand, within ABID97_RS16070at 3329.583 kb on - strand, within ABID97_RS16070at 3329.583 kb on - strand, within ABID97_RS16070at 3329.735 kb on + strandat 3329.891 kb on + strandat 3329.892 kb on - strandat 3330.305 kb on - strand, within ABID97_RS16075at 3330.334 kb on + strand, within ABID97_RS16075at 3330.359 kb on - strand, within ABID97_RS16075at 3330.391 kb on + strand, within ABID97_RS16075at 3330.391 kb on + strand, within ABID97_RS16075at 3330.461 kb on - strand, within ABID97_RS16075at 3330.530 kb on - strand, within ABID97_RS16075at 3330.601 kb on + strand, within ABID97_RS16075at 3330.601 kb on + strand, within ABID97_RS16075

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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3,327,687 + ABID97_RS16065 0.17 -1.7
3,328,030 + ABID97_RS16065 0.52 -1.0
3,328,055 + ABID97_RS16065 0.55 +0.4
3,328,893 - ABID97_RS16070 0.32 +0.6
3,328,953 - ABID97_RS16070 0.37 +2.4
3,328,953 - ABID97_RS16070 0.37 -2.4
3,329,009 + ABID97_RS16070 0.42 -0.3
3,329,009 + ABID97_RS16070 0.42 +0.2
3,329,046 - ABID97_RS16070 0.44 -1.4
3,329,168 + ABID97_RS16070 0.54 -0.3
3,329,168 + ABID97_RS16070 0.54 +0.7
3,329,168 + ABID97_RS16070 0.54 -0.6
3,329,168 + ABID97_RS16070 0.54 -1.4
3,329,169 - ABID97_RS16070 0.54 +2.2
3,329,169 - ABID97_RS16070 0.54 +0.4
3,329,318 + ABID97_RS16070 0.66 +1.2
3,329,318 + ABID97_RS16070 0.66 +0.8
3,329,319 - ABID97_RS16070 0.66 +0.0
3,329,321 + ABID97_RS16070 0.66 +0.2
3,329,363 + ABID97_RS16070 0.70 -0.2
3,329,526 - ABID97_RS16070 0.83 +0.1
3,329,583 - ABID97_RS16070 0.87 -0.4
3,329,583 - ABID97_RS16070 0.87 -0.1
3,329,735 + +0.4
3,329,891 + -0.2
3,329,892 - +0.7
3,330,305 - ABID97_RS16075 0.29 -1.8
3,330,334 + ABID97_RS16075 0.31 +0.4
3,330,359 - ABID97_RS16075 0.33 +0.1
3,330,391 + ABID97_RS16075 0.36 +0.2
3,330,391 + ABID97_RS16075 0.36 -0.9
3,330,461 - ABID97_RS16075 0.42 -0.7
3,330,530 - ABID97_RS16075 0.48 -0.4
3,330,601 + ABID97_RS16075 0.54 -0.7
3,330,601 + ABID97_RS16075 0.54 -0.3

Or see this region's nucleotide sequence