Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16025

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16020 and ABID97_RS16025 are separated by 17 nucleotidesABID97_RS16025 and ABID97_RS16030 are separated by 81 nucleotidesABID97_RS16030 and ABID97_RS16035 are separated by 67 nucleotides ABID97_RS16020: ABID97_RS16020 - nitrite reductase large subunit NirB, at 3,317,928 to 3,320,396 _RS16020 ABID97_RS16025: ABID97_RS16025 - nitrite reductase small subunit NirD, at 3,320,414 to 3,320,824 _RS16025 ABID97_RS16030: ABID97_RS16030 - uroporphyrinogen-III C-methyltransferase, at 3,320,906 to 3,321,676 _RS16030 ABID97_RS16035: ABID97_RS16035 - formate/nitrite transporter family protein, at 3,321,744 to 3,322,556 _RS16035 Position (kb) 3320 3321Strain fitness (log2 ratio) -1 0 1at 3321.422 kb on + strand, within ABID97_RS16030at 3321.423 kb on - strand, within ABID97_RS16030at 3321.423 kb on - strand, within ABID97_RS16030at 3321.750 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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3,321,422 + ABID97_RS16030 0.67 +0.3
3,321,423 - ABID97_RS16030 0.67 -0.4
3,321,423 - ABID97_RS16030 0.67 -1.5
3,321,750 + +1.1

Or see this region's nucleotide sequence