Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15015

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15005 and ABID97_RS15010 are separated by 279 nucleotidesABID97_RS15010 and ABID97_RS15015 are separated by 10 nucleotidesABID97_RS15015 and ABID97_RS15020 are separated by 102 nucleotides ABID97_RS15005: ABID97_RS15005 - sigma-54-dependent Fis family transcriptional regulator, at 3,115,960 to 3,118,092 _RS15005 ABID97_RS15010: ABID97_RS15010 - cytochrome c-550 PedF, at 3,118,372 to 3,118,890 _RS15010 ABID97_RS15015: ABID97_RS15015 - ABC transporter substrate-binding protein, at 3,118,901 to 3,119,755 _RS15015 ABID97_RS15020: ABID97_RS15020 - aldehyde dehydrogenase, at 3,119,858 to 3,121,378 _RS15020 Position (kb) 3118 3119 3120Strain fitness (log2 ratio) -1 0 1 2at 3118.272 kb on + strandat 3118.272 kb on + strandat 3118.612 kb on + strand, within ABID97_RS15010at 3118.613 kb on - strand, within ABID97_RS15010at 3118.801 kb on + strand, within ABID97_RS15010at 3119.048 kb on + strand, within ABID97_RS15015at 3119.208 kb on - strand, within ABID97_RS15015at 3119.303 kb on + strand, within ABID97_RS15015at 3119.886 kb on + strandat 3119.886 kb on + strandat 3119.887 kb on - strandat 3119.887 kb on - strandat 3119.917 kb on - strandat 3120.228 kb on + strand, within ABID97_RS15020at 3120.228 kb on + strand, within ABID97_RS15020at 3120.228 kb on + strand, within ABID97_RS15020at 3120.228 kb on + strand, within ABID97_RS15020at 3120.229 kb on - strand, within ABID97_RS15020at 3120.315 kb on + strand, within ABID97_RS15020at 3120.316 kb on - strand, within ABID97_RS15020at 3120.316 kb on - strand, within ABID97_RS15020at 3120.316 kb on - strand, within ABID97_RS15020at 3120.316 kb on - strand, within ABID97_RS15020at 3120.438 kb on + strand, within ABID97_RS15020at 3120.438 kb on + strand, within ABID97_RS15020at 3120.439 kb on - strand, within ABID97_RS15020

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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3,118,272 + -0.2
3,118,272 + -0.1
3,118,612 + ABID97_RS15010 0.46 +0.1
3,118,613 - ABID97_RS15010 0.46 -1.0
3,118,801 + ABID97_RS15010 0.83 +1.5
3,119,048 + ABID97_RS15015 0.17 +0.6
3,119,208 - ABID97_RS15015 0.36 +0.6
3,119,303 + ABID97_RS15015 0.47 +0.7
3,119,886 + -0.7
3,119,886 + -1.0
3,119,887 - -0.4
3,119,887 - -0.6
3,119,917 - -0.2
3,120,228 + ABID97_RS15020 0.24 +0.9
3,120,228 + ABID97_RS15020 0.24 -0.4
3,120,228 + ABID97_RS15020 0.24 -0.1
3,120,228 + ABID97_RS15020 0.24 -0.2
3,120,229 - ABID97_RS15020 0.24 +0.5
3,120,315 + ABID97_RS15020 0.30 -0.1
3,120,316 - ABID97_RS15020 0.30 +0.1
3,120,316 - ABID97_RS15020 0.30 -1.4
3,120,316 - ABID97_RS15020 0.30 -0.2
3,120,316 - ABID97_RS15020 0.30 -0.5
3,120,438 + ABID97_RS15020 0.38 +0.0
3,120,438 + ABID97_RS15020 0.38 +2.2
3,120,439 - ABID97_RS15020 0.38 +0.4

Or see this region's nucleotide sequence