Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15005 and ABID97_RS15010 are separated by 279 nucleotides ABID97_RS15010 and ABID97_RS15015 are separated by 10 nucleotides ABID97_RS15015 and ABID97_RS15020 are separated by 102 nucleotides
ABID97_RS15005: ABID97_RS15005 - sigma-54-dependent Fis family transcriptional regulator, at 3,115,960 to 3,118,092
_RS15005
ABID97_RS15010: ABID97_RS15010 - cytochrome c-550 PedF, at 3,118,372 to 3,118,890
_RS15010
ABID97_RS15015: ABID97_RS15015 - ABC transporter substrate-binding protein, at 3,118,901 to 3,119,755
_RS15015
ABID97_RS15020: ABID97_RS15020 - aldehyde dehydrogenase, at 3,119,858 to 3,121,378
_RS15020
Position (kb)
3118
3119
3120 Strain fitness (log2 ratio)
-1
0
1
2 at 3118.272 kb on + strand at 3118.272 kb on + strand at 3118.612 kb on + strand, within ABID97_RS15010 at 3118.613 kb on - strand, within ABID97_RS15010 at 3118.801 kb on + strand, within ABID97_RS15010 at 3119.048 kb on + strand, within ABID97_RS15015 at 3119.208 kb on - strand, within ABID97_RS15015 at 3119.303 kb on + strand, within ABID97_RS15015 at 3119.886 kb on + strand at 3119.886 kb on + strand at 3119.887 kb on - strand at 3119.887 kb on - strand at 3119.917 kb on - strand at 3120.228 kb on + strand, within ABID97_RS15020 at 3120.228 kb on + strand, within ABID97_RS15020 at 3120.228 kb on + strand, within ABID97_RS15020 at 3120.228 kb on + strand, within ABID97_RS15020 at 3120.229 kb on - strand, within ABID97_RS15020 at 3120.315 kb on + strand, within ABID97_RS15020 at 3120.316 kb on - strand, within ABID97_RS15020 at 3120.316 kb on - strand, within ABID97_RS15020 at 3120.316 kb on - strand, within ABID97_RS15020 at 3120.316 kb on - strand, within ABID97_RS15020 at 3120.438 kb on + strand, within ABID97_RS15020 at 3120.438 kb on + strand, within ABID97_RS15020 at 3120.439 kb on - strand, within ABID97_RS15020
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 3,118,272 + -0.2 3,118,272 + -0.1 3,118,612 + ABID97_RS15010 0.46 +0.1 3,118,613 - ABID97_RS15010 0.46 -1.0 3,118,801 + ABID97_RS15010 0.83 +1.5 3,119,048 + ABID97_RS15015 0.17 +0.6 3,119,208 - ABID97_RS15015 0.36 +0.6 3,119,303 + ABID97_RS15015 0.47 +0.7 3,119,886 + -0.7 3,119,886 + -1.0 3,119,887 - -0.4 3,119,887 - -0.6 3,119,917 - -0.2 3,120,228 + ABID97_RS15020 0.24 +0.9 3,120,228 + ABID97_RS15020 0.24 -0.4 3,120,228 + ABID97_RS15020 0.24 -0.1 3,120,228 + ABID97_RS15020 0.24 -0.2 3,120,229 - ABID97_RS15020 0.24 +0.5 3,120,315 + ABID97_RS15020 0.30 -0.1 3,120,316 - ABID97_RS15020 0.30 +0.1 3,120,316 - ABID97_RS15020 0.30 -1.4 3,120,316 - ABID97_RS15020 0.30 -0.2 3,120,316 - ABID97_RS15020 0.30 -0.5 3,120,438 + ABID97_RS15020 0.38 +0.0 3,120,438 + ABID97_RS15020 0.38 +2.2 3,120,439 - ABID97_RS15020 0.38 +0.4
Or see this region's nucleotide sequence