Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14660

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14650 and ABID97_RS14655 are separated by 182 nucleotidesABID97_RS14655 and ABID97_RS14660 are separated by 157 nucleotidesABID97_RS14660 and ABID97_RS14665 overlap by 4 nucleotides ABID97_RS14650: ABID97_RS14650 - transcription termination factor Rho, at 3,045,446 to 3,046,711 _RS14650 ABID97_RS14655: ABID97_RS14655 - thioredoxin TrxA, at 3,046,894 to 3,047,226 _RS14655 ABID97_RS14660: ABID97_RS14660 - PD-(D/E)XK nuclease family protein, at 3,047,384 to 3,049,969 _RS14660 ABID97_RS14665: ABID97_RS14665 - UvrD-helicase domain-containing protein, at 3,049,966 to 3,053,229 _RS14665 Position (kb) 3047 3048 3049 3050Strain fitness (log2 ratio) -1 0 1 2at 3046.839 kb on - strandat 3046.839 kb on - strandat 3046.850 kb on + strandat 3046.851 kb on - strandat 3047.378 kb on + strandat 3047.379 kb on - strandat 3049.181 kb on + strand, within ABID97_RS14660at 3049.767 kb on + strandat 3049.768 kb on - strandat 3050.326 kb on + strand, within ABID97_RS14665at 3050.542 kb on + strand, within ABID97_RS14665at 3050.542 kb on + strand, within ABID97_RS14665at 3050.543 kb on - strand, within ABID97_RS14665at 3050.560 kb on + strand, within ABID97_RS14665at 3050.560 kb on + strand, within ABID97_RS14665at 3050.560 kb on + strand, within ABID97_RS14665

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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3,046,839 - -0.2
3,046,839 - -0.1
3,046,850 + +1.1
3,046,851 - +0.2
3,047,378 + -0.2
3,047,379 - -0.4
3,049,181 + ABID97_RS14660 0.69 +1.2
3,049,767 + -0.8
3,049,768 - +0.6
3,050,326 + ABID97_RS14665 0.11 -0.6
3,050,542 + ABID97_RS14665 0.18 +2.2
3,050,542 + ABID97_RS14665 0.18 +2.2
3,050,543 - ABID97_RS14665 0.18 -0.6
3,050,560 + ABID97_RS14665 0.18 -0.6
3,050,560 + ABID97_RS14665 0.18 -0.4
3,050,560 + ABID97_RS14665 0.18 -0.4

Or see this region's nucleotide sequence