Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14225

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14215 and ABID97_RS14220 overlap by 8 nucleotidesABID97_RS14220 and ABID97_RS14225 overlap by 4 nucleotidesABID97_RS14225 and ABID97_RS14230 are separated by 15 nucleotides ABID97_RS14215: ABID97_RS14215 - type IV pilus biogenesis/stability protein PilW, at 2,957,088 to 2,957,942 _RS14215 ABID97_RS14220: ABID97_RS14220 - helix-turn-helix domain-containing protein, at 2,957,935 to 2,958,909 _RS14220 ABID97_RS14225: ABID97_RS14225 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 2,958,906 to 2,960,183 _RS14225 ABID97_RS14230: ABID97_RS14230 - histidine--tRNA ligase, at 2,960,199 to 2,961,509 _RS14230 Position (kb) 2958 2959 2960 2961Strain fitness (log2 ratio) -1 0 1 2 3at 2957.911 kb on + strandat 2957.912 kb on - strandat 2957.916 kb on + strandat 2957.917 kb on - strandat 2958.851 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,957,911 + +1.1
2,957,912 - +0.1
2,957,916 + -0.4
2,957,917 - +2.7
2,958,851 - +2.8

Or see this region's nucleotide sequence