Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13155

Experiment: 4-Hydroxybenzoic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS13150 and ABID97_RS13155 are separated by 28 nucleotidesABID97_RS13155 and ABID97_RS13160 are separated by 87 nucleotides ABID97_RS13150: ABID97_RS13150 - LysR family transcriptional regulator, at 2,740,208 to 2,741,107 _RS13150 ABID97_RS13155: ABID97_RS13155 - MarR family winged helix-turn-helix transcriptional regulator, at 2,741,136 to 2,741,741 _RS13155 ABID97_RS13160: ABID97_RS13160 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,741,829 to 2,742,926 _RS13160 Position (kb) 2741 2742Strain fitness (log2 ratio) -1 0 1at 2740.197 kb on - strandat 2740.207 kb on + strandat 2741.137 kb on + strandat 2741.137 kb on + strandat 2741.590 kb on + strand, within ABID97_RS13155at 2741.650 kb on + strand, within ABID97_RS13155at 2741.651 kb on - strand, within ABID97_RS13155at 2741.963 kb on - strand, within ABID97_RS13160at 2742.392 kb on - strand, within ABID97_RS13160at 2742.476 kb on - strand, within ABID97_RS13160at 2742.584 kb on - strand, within ABID97_RS13160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
remove
2,740,197 - +0.9
2,740,207 + +0.0
2,741,137 + -0.4
2,741,137 + -0.9
2,741,590 + ABID97_RS13155 0.75 -1.2
2,741,650 + ABID97_RS13155 0.85 -1.3
2,741,651 - ABID97_RS13155 0.85 -1.5
2,741,963 - ABID97_RS13160 0.12 +0.4
2,742,392 - ABID97_RS13160 0.51 +0.4
2,742,476 - ABID97_RS13160 0.59 +0.1
2,742,584 - ABID97_RS13160 0.69 +0.2

Or see this region's nucleotide sequence