Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11970 and ABID97_RS11975 are separated by 9 nucleotides ABID97_RS11975 and ABID97_RS11980 are separated by 206 nucleotides ABID97_RS11980 and ABID97_RS11985 are separated by 33 nucleotides
ABID97_RS11970: ABID97_RS11970 - chemotaxis protein CheB, at 2,473,054 to 2,474,067
_RS11970
ABID97_RS11975: ABID97_RS11975 - manganese catalase family protein, at 2,474,077 to 2,474,997
_RS11975
ABID97_RS11980: ABID97_RS11980 - KGG domain-containing protein, at 2,475,204 to 2,475,410
_RS11980
ABID97_RS11985: ABID97_RS11985 - hypothetical protein, at 2,475,444 to 2,476,013
_RS11985
Position (kb)
2474
2475 Strain fitness (log2 ratio)
-1
0
1
2 at 2473.114 kb on + strand at 2473.114 kb on + strand at 2473.409 kb on - strand, within ABID97_RS11970 at 2474.357 kb on + strand, within ABID97_RS11975 at 2474.358 kb on - strand, within ABID97_RS11975 at 2474.358 kb on - strand, within ABID97_RS11975 at 2474.421 kb on - strand, within ABID97_RS11975 at 2474.421 kb on - strand, within ABID97_RS11975 at 2474.705 kb on + strand, within ABID97_RS11975 at 2474.705 kb on + strand, within ABID97_RS11975 at 2474.970 kb on - strand at 2475.139 kb on + strand at 2475.715 kb on + strand, within ABID97_RS11985 at 2475.715 kb on + strand, within ABID97_RS11985 at 2475.918 kb on + strand, within ABID97_RS11985
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 2,473,114 + +0.8 2,473,114 + +2.4 2,473,409 - ABID97_RS11970 0.35 +0.4 2,474,357 + ABID97_RS11975 0.30 +1.4 2,474,358 - ABID97_RS11975 0.31 +0.1 2,474,358 - ABID97_RS11975 0.31 +0.8 2,474,421 - ABID97_RS11975 0.37 -1.0 2,474,421 - ABID97_RS11975 0.37 +0.2 2,474,705 + ABID97_RS11975 0.68 +0.3 2,474,705 + ABID97_RS11975 0.68 +1.2 2,474,970 - -0.6 2,475,139 + +0.2 2,475,715 + ABID97_RS11985 0.48 +1.0 2,475,715 + ABID97_RS11985 0.48 -1.1 2,475,918 + ABID97_RS11985 0.83 +0.8
Or see this region's nucleotide sequence