Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11890

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11880 and ABID97_RS11885 are separated by 2 nucleotidesABID97_RS11885 and ABID97_RS11890 overlap by 4 nucleotidesABID97_RS11890 and ABID97_RS11895 overlap by 11 nucleotides ABID97_RS11880: ABID97_RS11880 - NAD-dependent epimerase/dehydratase family protein, at 2,453,807 to 2,454,937 _RS11880 ABID97_RS11885: ABID97_RS11885 - zinc-binding dehydrogenase, at 2,454,940 to 2,455,893 _RS11885 ABID97_RS11890: ABID97_RS11890 - Gfo/Idh/MocA family oxidoreductase, at 2,455,890 to 2,456,954 _RS11890 ABID97_RS11895: ABID97_RS11895 - glycosyltransferase family 4 protein, at 2,456,944 to 2,458,095 _RS11895 Position (kb) 2455 2456 2457Strain fitness (log2 ratio) -1 0 1 2at 2455.201 kb on + strand, within ABID97_RS11885at 2455.639 kb on + strand, within ABID97_RS11885at 2455.732 kb on + strand, within ABID97_RS11885at 2455.733 kb on - strand, within ABID97_RS11885at 2455.733 kb on - strand, within ABID97_RS11885at 2456.416 kb on + strand, within ABID97_RS11890at 2456.417 kb on - strand, within ABID97_RS11890at 2456.769 kb on + strand, within ABID97_RS11890at 2456.769 kb on + strand, within ABID97_RS11890at 2456.944 kb on - strandat 2456.944 kb on - strandat 2456.944 kb on - strandat 2457.365 kb on - strand, within ABID97_RS11895at 2457.452 kb on - strand, within ABID97_RS11895at 2457.457 kb on + strand, within ABID97_RS11895at 2457.458 kb on - strand, within ABID97_RS11895at 2457.743 kb on - strand, within ABID97_RS11895

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,455,201 + ABID97_RS11885 0.27 -0.4
2,455,639 + ABID97_RS11885 0.73 -0.4
2,455,732 + ABID97_RS11885 0.83 -0.4
2,455,733 - ABID97_RS11885 0.83 +0.4
2,455,733 - ABID97_RS11885 0.83 +0.2
2,456,416 + ABID97_RS11890 0.49 -0.0
2,456,417 - ABID97_RS11890 0.49 +0.1
2,456,769 + ABID97_RS11890 0.83 -0.6
2,456,769 + ABID97_RS11890 0.83 +0.7
2,456,944 - +0.2
2,456,944 - -0.4
2,456,944 - +0.6
2,457,365 - ABID97_RS11895 0.37 -0.4
2,457,452 - ABID97_RS11895 0.44 +1.9
2,457,457 + ABID97_RS11895 0.45 -0.8
2,457,458 - ABID97_RS11895 0.45 +0.3
2,457,743 - ABID97_RS11895 0.69 -0.9

Or see this region's nucleotide sequence