Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11005

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11000 and ABID97_RS11005 overlap by 4 nucleotidesABID97_RS11005 and ABID97_RS11010 are separated by 93 nucleotidesABID97_RS11010 and ABID97_RS11015 are separated by 75 nucleotides ABID97_RS11000: ABID97_RS11000 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 2,277,897 to 2,279,105 _RS11000 ABID97_RS11005: ABID97_RS11005 - acyl carrier protein, at 2,279,102 to 2,279,344 _RS11005 ABID97_RS11010: ABID97_RS11010 - phosphatase PAP2 family protein, at 2,279,438 to 2,280,154 _RS11010 ABID97_RS11015: ABID97_RS11015 - helix-turn-helix transcriptional regulator, at 2,280,230 to 2,281,072 _RS11015 Position (kb) 2279 2280Strain fitness (log2 ratio) -1 0 1at 2278.369 kb on + strand, within ABID97_RS11000at 2278.370 kb on - strand, within ABID97_RS11000at 2278.370 kb on - strand, within ABID97_RS11000at 2278.370 kb on - strand, within ABID97_RS11000at 2278.657 kb on + strand, within ABID97_RS11000at 2278.657 kb on + strand, within ABID97_RS11000at 2278.658 kb on - strand, within ABID97_RS11000at 2278.658 kb on - strand, within ABID97_RS11000at 2278.811 kb on - strand, within ABID97_RS11000at 2279.301 kb on + strand, within ABID97_RS11005at 2279.302 kb on - strand, within ABID97_RS11005at 2279.302 kb on - strand, within ABID97_RS11005at 2279.302 kb on - strand, within ABID97_RS11005at 2279.811 kb on + strand, within ABID97_RS11010at 2279.811 kb on + strand, within ABID97_RS11010at 2279.811 kb on + strand, within ABID97_RS11010at 2279.910 kb on + strand, within ABID97_RS11010at 2279.911 kb on - strand, within ABID97_RS11010at 2279.911 kb on - strand, within ABID97_RS11010at 2279.928 kb on + strand, within ABID97_RS11010at 2279.928 kb on + strand, within ABID97_RS11010at 2279.943 kb on + strand, within ABID97_RS11010at 2280.028 kb on - strand, within ABID97_RS11010at 2280.028 kb on - strand, within ABID97_RS11010

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,278,369 + ABID97_RS11000 0.39 +0.0
2,278,370 - ABID97_RS11000 0.39 +0.6
2,278,370 - ABID97_RS11000 0.39 +0.8
2,278,370 - ABID97_RS11000 0.39 +0.8
2,278,657 + ABID97_RS11000 0.63 -0.0
2,278,657 + ABID97_RS11000 0.63 -1.6
2,278,658 - ABID97_RS11000 0.63 +0.4
2,278,658 - ABID97_RS11000 0.63 +0.2
2,278,811 - ABID97_RS11000 0.76 -0.8
2,279,301 + ABID97_RS11005 0.82 +0.3
2,279,302 - ABID97_RS11005 0.82 +0.9
2,279,302 - ABID97_RS11005 0.82 -0.2
2,279,302 - ABID97_RS11005 0.82 +0.8
2,279,811 + ABID97_RS11010 0.52 -0.9
2,279,811 + ABID97_RS11010 0.52 +1.0
2,279,811 + ABID97_RS11010 0.52 -0.6
2,279,910 + ABID97_RS11010 0.66 -1.5
2,279,911 - ABID97_RS11010 0.66 +0.3
2,279,911 - ABID97_RS11010 0.66 +1.1
2,279,928 + ABID97_RS11010 0.68 -0.6
2,279,928 + ABID97_RS11010 0.68 -1.4
2,279,943 + ABID97_RS11010 0.70 +0.3
2,280,028 - ABID97_RS11010 0.82 -0.2
2,280,028 - ABID97_RS11010 0.82 -0.1

Or see this region's nucleotide sequence