Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10960

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10955 and ABID97_RS10960 are separated by 12 nucleotidesABID97_RS10960 and ABID97_RS10965 overlap by 4 nucleotidesABID97_RS10965 and ABID97_RS10970 are separated by 139 nucleotides ABID97_RS10955: ABID97_RS10955 - branched-chain amino acid ABC transporter permease, at 2,269,752 to 2,270,790 _RS10955 ABID97_RS10960: ABID97_RS10960 - branched-chain amino acid ABC transporter permease, at 2,270,803 to 2,271,684 _RS10960 ABID97_RS10965: ABID97_RS10965 - ABC transporter ATP-binding protein, at 2,271,681 to 2,272,544 _RS10965 ABID97_RS10970: ABID97_RS10970 - TetR/AcrR family transcriptional regulator, at 2,272,684 to 2,273,367 _RS10970 Position (kb) 2270 2271 2272Strain fitness (log2 ratio) -2 -1 0 1at 2270.072 kb on + strand, within ABID97_RS10955at 2270.072 kb on + strand, within ABID97_RS10955at 2270.073 kb on - strand, within ABID97_RS10955at 2270.540 kb on + strand, within ABID97_RS10955at 2270.541 kb on - strand, within ABID97_RS10955at 2270.541 kb on - strand, within ABID97_RS10955at 2270.592 kb on - strand, within ABID97_RS10955at 2270.763 kb on - strandat 2270.783 kb on - strandat 2270.894 kb on + strand, within ABID97_RS10960at 2270.894 kb on + strand, within ABID97_RS10960at 2270.895 kb on - strand, within ABID97_RS10960at 2270.895 kb on - strand, within ABID97_RS10960at 2270.895 kb on - strand, within ABID97_RS10960at 2271.590 kb on + strand, within ABID97_RS10960at 2271.591 kb on - strand, within ABID97_RS10960at 2272.345 kb on + strand, within ABID97_RS10965at 2272.346 kb on - strand, within ABID97_RS10965

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,270,072 + ABID97_RS10955 0.31 -0.2
2,270,072 + ABID97_RS10955 0.31 +0.2
2,270,073 - ABID97_RS10955 0.31 +0.1
2,270,540 + ABID97_RS10955 0.76 -1.6
2,270,541 - ABID97_RS10955 0.76 -0.1
2,270,541 - ABID97_RS10955 0.76 +0.8
2,270,592 - ABID97_RS10955 0.81 -0.2
2,270,763 - -0.2
2,270,783 - -0.2
2,270,894 + ABID97_RS10960 0.10 -1.3
2,270,894 + ABID97_RS10960 0.10 -1.1
2,270,895 - ABID97_RS10960 0.10 -0.7
2,270,895 - ABID97_RS10960 0.10 -1.5
2,270,895 - ABID97_RS10960 0.10 -0.4
2,271,590 + ABID97_RS10960 0.89 -0.5
2,271,591 - ABID97_RS10960 0.89 +0.3
2,272,345 + ABID97_RS10965 0.77 -0.0
2,272,346 - ABID97_RS10965 0.77 -1.9

Or see this region's nucleotide sequence