Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10820 and ABID97_RS10825 are separated by 113 nucleotides ABID97_RS10825 and ABID97_RS10830 are separated by 4 nucleotides ABID97_RS10830 and ABID97_RS10835 are separated by 21 nucleotides ABID97_RS10835 and ABID97_RS10840 are separated by 12 nucleotides ABID97_RS10840 and ABID97_RS10845 are separated by 175 nucleotides
ABID97_RS10820: ABID97_RS10820 - hypothetical protein, at 2,244,778 to 2,245,299
_RS10820
ABID97_RS10825: ABID97_RS10825 - 30S ribosomal protein S6, at 2,245,413 to 2,245,787
_RS10825
ABID97_RS10830: ABID97_RS10830 - primosomal replication protein N, at 2,245,792 to 2,246,109
_RS10830
ABID97_RS10835: ABID97_RS10835 - 30S ribosomal protein S18, at 2,246,131 to 2,246,412
_RS10835
ABID97_RS10840: ABID97_RS10840 - 50S ribosomal protein L9, at 2,246,425 to 2,246,877
_RS10840
ABID97_RS10845: ABID97_RS10845 - replicative DNA helicase, at 2,247,053 to 2,248,462
_RS10845
Position (kb)
2246
2247 Strain fitness (log2 ratio)
-1
0
1 at 2245.210 kb on + strand, within ABID97_RS10820 at 2245.210 kb on + strand, within ABID97_RS10820 at 2245.210 kb on + strand, within ABID97_RS10820 at 2245.211 kb on - strand, within ABID97_RS10820 at 2246.743 kb on + strand, within ABID97_RS10840 at 2246.743 kb on + strand, within ABID97_RS10840 at 2246.743 kb on + strand, within ABID97_RS10840 at 2246.743 kb on + strand, within ABID97_RS10840 at 2246.744 kb on - strand, within ABID97_RS10840 at 2246.744 kb on - strand, within ABID97_RS10840 at 2246.995 kb on + strand at 2247.024 kb on + strand at 2247.024 kb on + strand at 2247.025 kb on - strand at 2247.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 2,245,210 + ABID97_RS10820 0.83 +1.3 2,245,210 + ABID97_RS10820 0.83 -0.1 2,245,210 + ABID97_RS10820 0.83 -1.4 2,245,211 - ABID97_RS10820 0.83 +1.3 2,246,743 + ABID97_RS10840 0.70 +0.2 2,246,743 + ABID97_RS10840 0.70 -0.2 2,246,743 + ABID97_RS10840 0.70 -0.1 2,246,743 + ABID97_RS10840 0.70 -0.1 2,246,744 - ABID97_RS10840 0.70 +0.2 2,246,744 - ABID97_RS10840 0.70 +0.2 2,246,995 + -0.6 2,247,024 + +0.2 2,247,024 + -0.4 2,247,025 - -0.5 2,247,025 - +1.0
Or see this region's nucleotide sequence