Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10835

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10820 and ABID97_RS10825 are separated by 113 nucleotidesABID97_RS10825 and ABID97_RS10830 are separated by 4 nucleotidesABID97_RS10830 and ABID97_RS10835 are separated by 21 nucleotidesABID97_RS10835 and ABID97_RS10840 are separated by 12 nucleotidesABID97_RS10840 and ABID97_RS10845 are separated by 175 nucleotides ABID97_RS10820: ABID97_RS10820 - hypothetical protein, at 2,244,778 to 2,245,299 _RS10820 ABID97_RS10825: ABID97_RS10825 - 30S ribosomal protein S6, at 2,245,413 to 2,245,787 _RS10825 ABID97_RS10830: ABID97_RS10830 - primosomal replication protein N, at 2,245,792 to 2,246,109 _RS10830 ABID97_RS10835: ABID97_RS10835 - 30S ribosomal protein S18, at 2,246,131 to 2,246,412 _RS10835 ABID97_RS10840: ABID97_RS10840 - 50S ribosomal protein L9, at 2,246,425 to 2,246,877 _RS10840 ABID97_RS10845: ABID97_RS10845 - replicative DNA helicase, at 2,247,053 to 2,248,462 _RS10845 Position (kb) 2246 2247Strain fitness (log2 ratio) -1 0 1at 2245.210 kb on + strand, within ABID97_RS10820at 2245.210 kb on + strand, within ABID97_RS10820at 2245.210 kb on + strand, within ABID97_RS10820at 2245.211 kb on - strand, within ABID97_RS10820at 2246.743 kb on + strand, within ABID97_RS10840at 2246.743 kb on + strand, within ABID97_RS10840at 2246.743 kb on + strand, within ABID97_RS10840at 2246.743 kb on + strand, within ABID97_RS10840at 2246.744 kb on - strand, within ABID97_RS10840at 2246.744 kb on - strand, within ABID97_RS10840at 2246.995 kb on + strandat 2247.024 kb on + strandat 2247.024 kb on + strandat 2247.025 kb on - strandat 2247.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,245,210 + ABID97_RS10820 0.83 +1.3
2,245,210 + ABID97_RS10820 0.83 -0.1
2,245,210 + ABID97_RS10820 0.83 -1.4
2,245,211 - ABID97_RS10820 0.83 +1.3
2,246,743 + ABID97_RS10840 0.70 +0.2
2,246,743 + ABID97_RS10840 0.70 -0.2
2,246,743 + ABID97_RS10840 0.70 -0.1
2,246,743 + ABID97_RS10840 0.70 -0.1
2,246,744 - ABID97_RS10840 0.70 +0.2
2,246,744 - ABID97_RS10840 0.70 +0.2
2,246,995 + -0.6
2,247,024 + +0.2
2,247,024 + -0.4
2,247,025 - -0.5
2,247,025 - +1.0

Or see this region's nucleotide sequence