Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10380

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10375 and ABID97_RS10380 are separated by 88 nucleotidesABID97_RS10380 and ABID97_RS10385 are separated by 39 nucleotides ABID97_RS10375: ABID97_RS10375 - glucarate dehydratase, at 2,153,682 to 2,155,040 _RS10375 ABID97_RS10380: ABID97_RS10380 - aldehyde dehydrogenase family protein, at 2,155,129 to 2,156,565 _RS10380 ABID97_RS10385: ABID97_RS10385 - MFS transporter, at 2,156,605 to 2,157,840 _RS10385 Position (kb) 2155 2156 2157Strain fitness (log2 ratio) -2 -1 0 1 2at 2154.160 kb on - strand, within ABID97_RS10375at 2154.160 kb on - strand, within ABID97_RS10375at 2154.987 kb on + strandat 2154.987 kb on + strandat 2155.047 kb on - strandat 2156.309 kb on - strand, within ABID97_RS10380at 2156.553 kb on + strandat 2156.553 kb on + strandat 2156.553 kb on + strandat 2156.553 kb on + strandat 2156.553 kb on + strandat 2156.553 kb on + strandat 2156.553 kb on + strandat 2157.135 kb on - strand, within ABID97_RS10385at 2157.542 kb on - strand, within ABID97_RS10385

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,154,160 - ABID97_RS10375 0.35 +1.6
2,154,160 - ABID97_RS10375 0.35 -0.1
2,154,987 + +0.0
2,154,987 + +0.7
2,155,047 - -0.6
2,156,309 - ABID97_RS10380 0.82 +2.2
2,156,553 + -0.3
2,156,553 + +0.3
2,156,553 + -0.4
2,156,553 + +0.1
2,156,553 + -0.3
2,156,553 + +0.4
2,156,553 + -0.4
2,157,135 - ABID97_RS10385 0.43 -2.3
2,157,542 - ABID97_RS10385 0.76 +0.0

Or see this region's nucleotide sequence