Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09310

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09305 and ABID97_RS09310 are separated by 14 nucleotidesABID97_RS09310 and ABID97_RS09315 are separated by 32 nucleotides ABID97_RS09305: ABID97_RS09305 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 1,955,625 to 1,956,899 _RS09305 ABID97_RS09310: ABID97_RS09310 - MFS transporter, at 1,956,914 to 1,958,356 _RS09310 ABID97_RS09315: ABID97_RS09315 - substrate-binding domain-containing protein, at 1,958,389 to 1,959,495 _RS09315 Position (kb) 1956 1957 1958 1959Strain fitness (log2 ratio) -2 -1 0 1at 1956.022 kb on - strand, within ABID97_RS09305at 1956.090 kb on + strand, within ABID97_RS09305at 1956.348 kb on + strand, within ABID97_RS09305at 1956.349 kb on - strand, within ABID97_RS09305at 1957.131 kb on + strand, within ABID97_RS09310at 1957.192 kb on - strand, within ABID97_RS09310at 1957.320 kb on + strand, within ABID97_RS09310at 1957.320 kb on + strand, within ABID97_RS09310at 1957.320 kb on + strand, within ABID97_RS09310at 1957.321 kb on - strand, within ABID97_RS09310at 1957.321 kb on - strand, within ABID97_RS09310at 1957.321 kb on - strand, within ABID97_RS09310at 1957.416 kb on + strand, within ABID97_RS09310at 1957.417 kb on - strand, within ABID97_RS09310at 1957.447 kb on - strand, within ABID97_RS09310at 1957.447 kb on - strand, within ABID97_RS09310at 1957.471 kb on - strand, within ABID97_RS09310at 1957.492 kb on - strand, within ABID97_RS09310at 1957.492 kb on - strand, within ABID97_RS09310at 1958.052 kb on + strand, within ABID97_RS09310at 1958.146 kb on - strand, within ABID97_RS09310at 1958.337 kb on + strandat 1958.368 kb on + strandat 1958.368 kb on + strandat 1958.939 kb on + strand, within ABID97_RS09315

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,956,022 - ABID97_RS09305 0.31 -0.4
1,956,090 + ABID97_RS09305 0.36 +1.4
1,956,348 + ABID97_RS09305 0.57 -1.5
1,956,349 - ABID97_RS09305 0.57 -0.3
1,957,131 + ABID97_RS09310 0.15 -0.3
1,957,192 - ABID97_RS09310 0.19 -0.2
1,957,320 + ABID97_RS09310 0.28 -0.4
1,957,320 + ABID97_RS09310 0.28 -0.4
1,957,320 + ABID97_RS09310 0.28 +0.6
1,957,321 - ABID97_RS09310 0.28 -0.6
1,957,321 - ABID97_RS09310 0.28 -0.5
1,957,321 - ABID97_RS09310 0.28 -0.2
1,957,416 + ABID97_RS09310 0.35 -0.5
1,957,417 - ABID97_RS09310 0.35 -0.2
1,957,447 - ABID97_RS09310 0.37 -2.2
1,957,447 - ABID97_RS09310 0.37 +0.0
1,957,471 - ABID97_RS09310 0.39 +0.3
1,957,492 - ABID97_RS09310 0.40 -0.5
1,957,492 - ABID97_RS09310 0.40 -0.8
1,958,052 + ABID97_RS09310 0.79 -1.6
1,958,146 - ABID97_RS09310 0.85 +1.4
1,958,337 + -1.6
1,958,368 + -0.3
1,958,368 + +0.9
1,958,939 + ABID97_RS09315 0.50 +0.9

Or see this region's nucleotide sequence