Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09085 and ABID97_RS09090 are separated by 10 nucleotides ABID97_RS09090 and ABID97_RS09095 overlap by 4 nucleotides ABID97_RS09095 and ABID97_RS09100 are separated by 29 nucleotides ABID97_RS09100 and ABID97_RS09105 are separated by 52 nucleotides
ABID97_RS09085: ABID97_RS09085 - pilus assembly protein TadG-related protein, at 1,906,763 to 1,907,992
_RS09085
ABID97_RS09090: ABID97_RS09090 - TadE family protein, at 1,908,003 to 1,908,461
_RS09090
ABID97_RS09095: ABID97_RS09095 - TadE/TadG family type IV pilus assembly protein, at 1,908,458 to 1,908,907
_RS09095
ABID97_RS09100: ABID97_RS09100 - AAA family ATPase, at 1,908,937 to 1,910,088
_RS09100
ABID97_RS09105: ABID97_RS09105 - CpaF family protein, at 1,910,141 to 1,911,514
_RS09105
Position (kb) 1908
1909
1910
1911 Strain fitness (log2 ratio) -1
0
1 at 1907.977 kb on + strand at 1907.978 kb on - strand at 1908.111 kb on + strand, within ABID97_RS09090 at 1908.112 kb on - strand, within ABID97_RS09090 at 1908.150 kb on + strand, within ABID97_RS09090 at 1908.704 kb on + strand, within ABID97_RS09095 at 1908.852 kb on - strand, within ABID97_RS09095 at 1910.246 kb on + strand at 1910.516 kb on + strand, within ABID97_RS09105 at 1910.516 kb on + strand, within ABID97_RS09105 at 1910.517 kb on - strand, within ABID97_RS09105
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,907,977 + +0.6 1,907,978 - -0.2 1,908,111 + ABID97_RS09090 0.24 +1.6 1,908,112 - ABID97_RS09090 0.24 -0.0 1,908,150 + ABID97_RS09090 0.32 -1.0 1,908,704 + ABID97_RS09095 0.55 -0.1 1,908,852 - ABID97_RS09095 0.88 +0.6 1,910,246 + -1.1 1,910,516 + ABID97_RS09105 0.27 -0.2 1,910,516 + ABID97_RS09105 0.27 +0.1 1,910,517 - ABID97_RS09105 0.27 -0.7
Or see this region's nucleotide sequence