Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08285

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08275 and ABID97_RS08280 overlap by 4 nucleotidesABID97_RS08280 and ABID97_RS08285 are separated by 82 nucleotidesABID97_RS08285 and ABID97_RS08290 are separated by 146 nucleotidesABID97_RS08290 and ABID97_RS08295 are separated by 61 nucleotides ABID97_RS08275: ABID97_RS08275 - SAM-dependent methyltransferase, at 1,742,226 to 1,742,987 _RS08275 ABID97_RS08280: ABID97_RS08280 - Maf family nucleotide pyrophosphatase, at 1,742,984 to 1,743,565 _RS08280 ABID97_RS08285: ABID97_RS08285 - DUF177 domain-containing protein, at 1,743,648 to 1,744,205 _RS08285 ABID97_RS08290: ABID97_RS08290 - 50S ribosomal protein L32, at 1,744,352 to 1,744,534 _RS08290 ABID97_RS08295: ABID97_RS08295 - phosphate acyltransferase PlsX, at 1,744,596 to 1,745,693 _RS08295 Position (kb) 1743 1744 1745Strain fitness (log2 ratio) -2 -1 0 1at 1742.833 kb on + strand, within ABID97_RS08275at 1742.968 kb on + strandat 1742.969 kb on - strandat 1743.548 kb on + strandat 1743.549 kb on - strandat 1743.635 kb on + strandat 1743.636 kb on - strandat 1743.658 kb on + strandat 1743.658 kb on + strandat 1743.658 kb on + strandat 1743.659 kb on - strandat 1743.659 kb on - strandat 1743.659 kb on - strandat 1743.659 kb on - strandat 1743.659 kb on - strandat 1743.659 kb on - strandat 1743.738 kb on + strand, within ABID97_RS08285at 1744.564 kb on + strandat 1744.601 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,742,833 + ABID97_RS08275 0.80 +1.0
1,742,968 + -0.2
1,742,969 - -0.1
1,743,548 + +0.2
1,743,549 - +0.2
1,743,635 + +0.8
1,743,636 - -1.0
1,743,658 + -0.5
1,743,658 + +0.7
1,743,658 + -0.2
1,743,659 - -0.0
1,743,659 - -0.4
1,743,659 - +0.6
1,743,659 - -1.0
1,743,659 - -1.3
1,743,659 - -0.1
1,743,738 + ABID97_RS08285 0.16 -2.5
1,744,564 + +0.8
1,744,601 + -1.1

Or see this region's nucleotide sequence