Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08230

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08225 and ABID97_RS08230 are separated by 19 nucleotidesABID97_RS08230 and ABID97_RS08235 overlap by 4 nucleotides ABID97_RS08225: ABID97_RS08225 - hydroxymethylbilane synthase, at 1,729,744 to 1,730,649 _RS08225 ABID97_RS08230: ABID97_RS08230 - uroporphyrinogen-III synthase, at 1,730,669 to 1,731,457 _RS08230 ABID97_RS08235: ABID97_RS08235 - uroporphyrinogen-III C-methyltransferase, at 1,731,454 to 1,732,545 _RS08235 Position (kb) 1730 1731 1732Strain fitness (log2 ratio) -3 -2 -1 0 1at 1729.701 kb on + strandat 1729.702 kb on - strandat 1729.752 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,729,701 + -0.5
1,729,702 - -0.2
1,729,752 + -2.8

Or see this region's nucleotide sequence