Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07565

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07550 and ABID97_RS07555 overlap by 4 nucleotidesABID97_RS07555 and ABID97_RS07560 are separated by 109 nucleotidesABID97_RS07560 and ABID97_RS07565 are separated by 13 nucleotidesABID97_RS07565 and ABID97_RS07570 are separated by 9 nucleotidesABID97_RS07570 and ABID97_RS07575 overlap by 4 nucleotidesABID97_RS07575 and ABID97_RS07580 are separated by 11 nucleotides ABID97_RS07550: ABID97_RS07550 - 4Fe-4S dicluster domain-containing protein, at 1,594,140 to 1,596,278 _RS07550 ABID97_RS07555: ABID97_RS07555 - molecular chaperone TorD family protein, at 1,596,275 to 1,596,892 _RS07555 ABID97_RS07560: ABID97_RS07560 - formate dehydrogenase, at 1,597,002 to 1,597,235 _RS07560 ABID97_RS07565: ABID97_RS07565 - formate dehydrogenase subunit alpha, at 1,597,249 to 1,600,239 _RS07565 ABID97_RS07570: ABID97_RS07570 - formate dehydrogenase FDH3 subunit beta, at 1,600,249 to 1,600,872 _RS07570 ABID97_RS07575: ABID97_RS07575 - hypothetical protein, at 1,600,869 to 1,601,123 _RS07575 ABID97_RS07580: ABID97_RS07580 - formate dehydrogenase subunit gamma, at 1,601,135 to 1,602,352 _RS07580 Position (kb) 1597 1598 1599 1600 1601Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1596.274 kb on + strandat 1596.275 kb on - strandat 1596.275 kb on - strandat 1596.275 kb on - strandat 1596.335 kb on + strandat 1596.336 kb on - strandat 1596.337 kb on - strand, within ABID97_RS07555at 1596.360 kb on - strand, within ABID97_RS07555at 1596.543 kb on - strand, within ABID97_RS07555at 1596.543 kb on - strand, within ABID97_RS07555at 1596.560 kb on + strand, within ABID97_RS07555at 1596.560 kb on + strand, within ABID97_RS07555at 1596.560 kb on + strand, within ABID97_RS07555at 1596.561 kb on - strand, within ABID97_RS07555at 1596.561 kb on - strand, within ABID97_RS07555at 1596.692 kb on + strand, within ABID97_RS07555at 1596.693 kb on - strand, within ABID97_RS07555at 1596.693 kb on - strand, within ABID97_RS07555at 1596.697 kb on + strand, within ABID97_RS07555at 1596.697 kb on + strand, within ABID97_RS07555at 1596.698 kb on - strand, within ABID97_RS07555at 1596.821 kb on + strand, within ABID97_RS07555at 1596.822 kb on - strand, within ABID97_RS07555at 1596.822 kb on - strand, within ABID97_RS07555at 1596.900 kb on - strandat 1596.900 kb on - strandat 1596.932 kb on + strandat 1596.932 kb on + strandat 1596.933 kb on - strandat 1596.937 kb on + strandat 1596.950 kb on + strandat 1596.951 kb on - strandat 1596.951 kb on - strandat 1596.951 kb on - strandat 1596.966 kb on + strandat 1596.967 kb on - strandat 1597.058 kb on - strand, within ABID97_RS07560at 1597.212 kb on + strandat 1597.213 kb on - strandat 1597.215 kb on + strandat 1597.215 kb on + strandat 1597.215 kb on + strandat 1597.215 kb on + strandat 1597.215 kb on + strandat 1597.215 kb on + strandat 1597.216 kb on - strandat 1597.216 kb on - strandat 1597.216 kb on - strandat 1597.216 kb on - strandat 1597.216 kb on - strandat 1597.666 kb on + strand, within ABID97_RS07565at 1597.705 kb on + strand, within ABID97_RS07565at 1597.831 kb on + strand, within ABID97_RS07565at 1597.831 kb on + strand, within ABID97_RS07565at 1597.832 kb on - strand, within ABID97_RS07565at 1597.832 kb on - strand, within ABID97_RS07565at 1597.958 kb on - strand, within ABID97_RS07565at 1597.958 kb on - strand, within ABID97_RS07565at 1597.958 kb on - strand, within ABID97_RS07565at 1597.990 kb on + strand, within ABID97_RS07565at 1597.990 kb on + strand, within ABID97_RS07565at 1597.990 kb on + strand, within ABID97_RS07565at 1597.991 kb on - strand, within ABID97_RS07565at 1597.991 kb on - strand, within ABID97_RS07565at 1597.991 kb on - strand, within ABID97_RS07565at 1598.119 kb on + strand, within ABID97_RS07565at 1598.119 kb on + strand, within ABID97_RS07565at 1598.119 kb on + strand, within ABID97_RS07565at 1598.120 kb on - strand, within ABID97_RS07565at 1598.120 kb on - strand, within ABID97_RS07565at 1598.120 kb on - strand, within ABID97_RS07565at 1598.120 kb on - strand, within ABID97_RS07565at 1598.206 kb on + strand, within ABID97_RS07565at 1598.207 kb on - strand, within ABID97_RS07565at 1598.207 kb on - strand, within ABID97_RS07565at 1598.207 kb on - strand, within ABID97_RS07565at 1598.207 kb on - strand, within ABID97_RS07565at 1598.207 kb on - strand, within ABID97_RS07565at 1598.207 kb on - strand, within ABID97_RS07565at 1598.207 kb on - strand, within ABID97_RS07565at 1598.539 kb on + strand, within ABID97_RS07565at 1598.542 kb on + strand, within ABID97_RS07565at 1598.597 kb on - strand, within ABID97_RS07565at 1598.597 kb on - strand, within ABID97_RS07565at 1598.731 kb on + strand, within ABID97_RS07565at 1598.731 kb on + strand, within ABID97_RS07565at 1598.731 kb on + strand, within ABID97_RS07565at 1598.732 kb on - strand, within ABID97_RS07565at 1598.893 kb on + strand, within ABID97_RS07565at 1599.067 kb on + strand, within ABID97_RS07565at 1599.068 kb on - strand, within ABID97_RS07565at 1599.068 kb on - strand, within ABID97_RS07565at 1599.154 kb on + strand, within ABID97_RS07565at 1599.346 kb on + strand, within ABID97_RS07565at 1599.347 kb on - strand, within ABID97_RS07565at 1599.700 kb on + strand, within ABID97_RS07565at 1599.731 kb on - strand, within ABID97_RS07565at 1599.731 kb on - strand, within ABID97_RS07565at 1599.731 kb on - strand, within ABID97_RS07565at 1599.778 kb on + strand, within ABID97_RS07565at 1599.778 kb on + strand, within ABID97_RS07565at 1599.779 kb on - strand, within ABID97_RS07565at 1599.832 kb on + strand, within ABID97_RS07565at 1599.862 kb on + strand, within ABID97_RS07565at 1599.863 kb on - strand, within ABID97_RS07565at 1599.863 kb on - strand, within ABID97_RS07565at 1600.171 kb on + strandat 1600.172 kb on - strandat 1600.172 kb on - strandat 1600.178 kb on - strandat 1600.238 kb on - strandat 1600.466 kb on - strand, within ABID97_RS07570at 1600.531 kb on + strand, within ABID97_RS07570at 1600.532 kb on - strand, within ABID97_RS07570at 1600.532 kb on - strand, within ABID97_RS07570at 1601.106 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,596,274 + +0.5
1,596,275 - -0.4
1,596,275 - -1.2
1,596,275 - -0.7
1,596,335 + +0.1
1,596,336 - -1.2
1,596,337 - ABID97_RS07555 0.10 -0.8
1,596,360 - ABID97_RS07555 0.14 +0.4
1,596,543 - ABID97_RS07555 0.43 -0.7
1,596,543 - ABID97_RS07555 0.43 -0.9
1,596,560 + ABID97_RS07555 0.46 -1.9
1,596,560 + ABID97_RS07555 0.46 -1.0
1,596,560 + ABID97_RS07555 0.46 -0.3
1,596,561 - ABID97_RS07555 0.46 -1.1
1,596,561 - ABID97_RS07555 0.46 +0.8
1,596,692 + ABID97_RS07555 0.67 -0.9
1,596,693 - ABID97_RS07555 0.68 -1.1
1,596,693 - ABID97_RS07555 0.68 -0.3
1,596,697 + ABID97_RS07555 0.68 -0.7
1,596,697 + ABID97_RS07555 0.68 -0.6
1,596,698 - ABID97_RS07555 0.68 -2.8
1,596,821 + ABID97_RS07555 0.88 -0.5
1,596,822 - ABID97_RS07555 0.89 -0.4
1,596,822 - ABID97_RS07555 0.89 -0.9
1,596,900 - -0.1
1,596,900 - -0.2
1,596,932 + +0.2
1,596,932 + -1.2
1,596,933 - +0.4
1,596,937 + +0.3
1,596,950 + -0.9
1,596,951 - -0.8
1,596,951 - +1.1
1,596,951 - -1.5
1,596,966 + -0.0
1,596,967 - +2.8
1,597,058 - ABID97_RS07560 0.24 -0.2
1,597,212 + +0.0
1,597,213 - -0.4
1,597,215 + -1.2
1,597,215 + -0.2
1,597,215 + -0.4
1,597,215 + +0.7
1,597,215 + -1.4
1,597,215 + +0.0
1,597,216 - +0.1
1,597,216 - -0.1
1,597,216 - -0.7
1,597,216 - -1.8
1,597,216 - -0.0
1,597,666 + ABID97_RS07565 0.14 -0.1
1,597,705 + ABID97_RS07565 0.15 -0.5
1,597,831 + ABID97_RS07565 0.19 -0.9
1,597,831 + ABID97_RS07565 0.19 +2.1
1,597,832 - ABID97_RS07565 0.19 +1.1
1,597,832 - ABID97_RS07565 0.19 -0.3
1,597,958 - ABID97_RS07565 0.24 -0.0
1,597,958 - ABID97_RS07565 0.24 +0.6
1,597,958 - ABID97_RS07565 0.24 -0.6
1,597,990 + ABID97_RS07565 0.25 +1.1
1,597,990 + ABID97_RS07565 0.25 -1.2
1,597,990 + ABID97_RS07565 0.25 -1.0
1,597,991 - ABID97_RS07565 0.25 -1.0
1,597,991 - ABID97_RS07565 0.25 -1.8
1,597,991 - ABID97_RS07565 0.25 +0.1
1,598,119 + ABID97_RS07565 0.29 -0.7
1,598,119 + ABID97_RS07565 0.29 -0.3
1,598,119 + ABID97_RS07565 0.29 +0.5
1,598,120 - ABID97_RS07565 0.29 -0.4
1,598,120 - ABID97_RS07565 0.29 -1.3
1,598,120 - ABID97_RS07565 0.29 -0.1
1,598,120 - ABID97_RS07565 0.29 +0.4
1,598,206 + ABID97_RS07565 0.32 +0.5
1,598,207 - ABID97_RS07565 0.32 +0.3
1,598,207 - ABID97_RS07565 0.32 +0.8
1,598,207 - ABID97_RS07565 0.32 -0.7
1,598,207 - ABID97_RS07565 0.32 +1.1
1,598,207 - ABID97_RS07565 0.32 -1.5
1,598,207 - ABID97_RS07565 0.32 -0.3
1,598,207 - ABID97_RS07565 0.32 -0.6
1,598,539 + ABID97_RS07565 0.43 -0.8
1,598,542 + ABID97_RS07565 0.43 -0.2
1,598,597 - ABID97_RS07565 0.45 +1.0
1,598,597 - ABID97_RS07565 0.45 +0.4
1,598,731 + ABID97_RS07565 0.50 -0.5
1,598,731 + ABID97_RS07565 0.50 -0.5
1,598,731 + ABID97_RS07565 0.50 -0.2
1,598,732 - ABID97_RS07565 0.50 -0.5
1,598,893 + ABID97_RS07565 0.55 -0.1
1,599,067 + ABID97_RS07565 0.61 -0.6
1,599,068 - ABID97_RS07565 0.61 +1.4
1,599,068 - ABID97_RS07565 0.61 -0.1
1,599,154 + ABID97_RS07565 0.64 -0.5
1,599,346 + ABID97_RS07565 0.70 -0.2
1,599,347 - ABID97_RS07565 0.70 +0.2
1,599,700 + ABID97_RS07565 0.82 -0.3
1,599,731 - ABID97_RS07565 0.83 -0.7
1,599,731 - ABID97_RS07565 0.83 -0.1
1,599,731 - ABID97_RS07565 0.83 -1.9
1,599,778 + ABID97_RS07565 0.85 +0.3
1,599,778 + ABID97_RS07565 0.85 -0.5
1,599,779 - ABID97_RS07565 0.85 -1.0
1,599,832 + ABID97_RS07565 0.86 -0.9
1,599,862 + ABID97_RS07565 0.87 -1.1
1,599,863 - ABID97_RS07565 0.87 +0.7
1,599,863 - ABID97_RS07565 0.87 +1.4
1,600,171 + -0.3
1,600,172 - +3.4
1,600,172 - -0.5
1,600,178 - +0.1
1,600,238 - +0.5
1,600,466 - ABID97_RS07570 0.35 +0.1
1,600,531 + ABID97_RS07570 0.45 +1.1
1,600,532 - ABID97_RS07570 0.45 -1.0
1,600,532 - ABID97_RS07570 0.45 -0.0
1,601,106 + -0.4

Or see this region's nucleotide sequence