Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06015 and ABID97_RS06020 overlap by 16 nucleotides ABID97_RS06020 and ABID97_RS06025 are separated by 60 nucleotides ABID97_RS06025 and ABID97_RS06030 are separated by 120 nucleotides ABID97_RS06030 and ABID97_RS06035 are separated by 11 nucleotides
ABID97_RS06015: ABID97_RS06015 - LysR substrate-binding domain-containing protein, at 1,273,329 to 1,274,261
_RS06015
ABID97_RS06020: ABID97_RS06020 - hypothetical protein, at 1,274,246 to 1,274,485
_RS06020
ABID97_RS06025: ABID97_RS06025 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 1,274,546 to 1,275,109
_RS06025
ABID97_RS06030: ABID97_RS06030 - putative DNA modification/repair radical SAM protein, at 1,275,230 to 1,276,483
_RS06030
ABID97_RS06035: ABID97_RS06035 - UdgX family uracil-DNA binding protein, at 1,276,495 to 1,277,961
_RS06035
Position (kb) 1275
1276
1277 Strain fitness (log2 ratio) -1
0
1
2 at 1274.260 kb on - strand at 1274.350 kb on - strand, within ABID97_RS06020 at 1274.556 kb on + strand at 1274.679 kb on + strand, within ABID97_RS06025 at 1274.680 kb on - strand, within ABID97_RS06025 at 1274.680 kb on - strand, within ABID97_RS06025 at 1274.808 kb on + strand, within ABID97_RS06025 at 1274.808 kb on + strand, within ABID97_RS06025 at 1274.808 kb on + strand, within ABID97_RS06025 at 1274.953 kb on - strand, within ABID97_RS06025 at 1275.122 kb on - strand at 1275.122 kb on - strand at 1275.196 kb on + strand at 1275.200 kb on + strand at 1275.201 kb on - strand at 1275.275 kb on + strand at 1275.371 kb on + strand, within ABID97_RS06030 at 1275.371 kb on + strand, within ABID97_RS06030 at 1275.372 kb on - strand, within ABID97_RS06030 at 1275.372 kb on - strand, within ABID97_RS06030 at 1275.432 kb on - strand, within ABID97_RS06030 at 1275.432 kb on - strand, within ABID97_RS06030 at 1275.647 kb on + strand, within ABID97_RS06030 at 1275.647 kb on + strand, within ABID97_RS06030 at 1275.999 kb on - strand, within ABID97_RS06030 at 1276.008 kb on - strand, within ABID97_RS06030 at 1276.026 kb on - strand, within ABID97_RS06030 at 1276.026 kb on - strand, within ABID97_RS06030 at 1276.028 kb on + strand, within ABID97_RS06030 at 1276.028 kb on + strand, within ABID97_RS06030 at 1276.029 kb on - strand, within ABID97_RS06030 at 1276.029 kb on - strand, within ABID97_RS06030 at 1276.137 kb on - strand, within ABID97_RS06030 at 1276.137 kb on - strand, within ABID97_RS06030 at 1276.137 kb on - strand, within ABID97_RS06030 at 1276.137 kb on - strand, within ABID97_RS06030 at 1277.137 kb on + strand, within ABID97_RS06035 at 1277.137 kb on + strand, within ABID97_RS06035 at 1277.137 kb on + strand, within ABID97_RS06035 at 1277.137 kb on + strand, within ABID97_RS06035 at 1277.138 kb on - strand, within ABID97_RS06035 at 1277.138 kb on - strand, within ABID97_RS06035 at 1277.140 kb on + strand, within ABID97_RS06035 at 1277.141 kb on - strand, within ABID97_RS06035 at 1277.141 kb on - strand, within ABID97_RS06035
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,274,260 - +0.4 1,274,350 - ABID97_RS06020 0.43 -0.0 1,274,556 + -0.7 1,274,679 + ABID97_RS06025 0.24 +0.2 1,274,680 - ABID97_RS06025 0.24 +0.3 1,274,680 - ABID97_RS06025 0.24 -0.8 1,274,808 + ABID97_RS06025 0.46 +0.0 1,274,808 + ABID97_RS06025 0.46 -0.0 1,274,808 + ABID97_RS06025 0.46 +2.5 1,274,953 - ABID97_RS06025 0.72 +0.1 1,275,122 - -0.0 1,275,122 - -1.2 1,275,196 + -1.0 1,275,200 + -0.1 1,275,201 - -0.1 1,275,275 + +0.3 1,275,371 + ABID97_RS06030 0.11 -0.8 1,275,371 + ABID97_RS06030 0.11 +0.1 1,275,372 - ABID97_RS06030 0.11 +0.5 1,275,372 - ABID97_RS06030 0.11 +0.1 1,275,432 - ABID97_RS06030 0.16 -1.3 1,275,432 - ABID97_RS06030 0.16 +0.9 1,275,647 + ABID97_RS06030 0.33 -0.4 1,275,647 + ABID97_RS06030 0.33 -1.1 1,275,999 - ABID97_RS06030 0.61 +0.7 1,276,008 - ABID97_RS06030 0.62 -1.1 1,276,026 - ABID97_RS06030 0.63 +0.3 1,276,026 - ABID97_RS06030 0.63 +0.8 1,276,028 + ABID97_RS06030 0.64 +0.1 1,276,028 + ABID97_RS06030 0.64 +0.3 1,276,029 - ABID97_RS06030 0.64 +1.2 1,276,029 - ABID97_RS06030 0.64 -0.0 1,276,137 - ABID97_RS06030 0.72 -1.6 1,276,137 - ABID97_RS06030 0.72 +0.6 1,276,137 - ABID97_RS06030 0.72 -0.5 1,276,137 - ABID97_RS06030 0.72 -0.2 1,277,137 + ABID97_RS06035 0.44 +0.5 1,277,137 + ABID97_RS06035 0.44 +0.4 1,277,137 + ABID97_RS06035 0.44 -0.1 1,277,137 + ABID97_RS06035 0.44 -1.1 1,277,138 - ABID97_RS06035 0.44 -0.3 1,277,138 - ABID97_RS06035 0.44 -0.7 1,277,140 + ABID97_RS06035 0.44 -1.0 1,277,141 - ABID97_RS06035 0.44 +1.6 1,277,141 - ABID97_RS06035 0.44 +0.4
Or see this region's nucleotide sequence