Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04905

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04895 and ABID97_RS04900 are separated by 122 nucleotidesABID97_RS04900 and ABID97_RS04905 are separated by 71 nucleotidesABID97_RS04905 and ABID97_RS04910 are separated by 6 nucleotidesABID97_RS04910 and ABID97_RS04915 are separated by 143 nucleotides ABID97_RS04895: ABID97_RS04895 - site-specific recombinase, at 1,017,783 to 1,019,759 _RS04895 ABID97_RS04900: ABID97_RS04900 - Co2+/Mg2+ efflux protein ApaG, at 1,019,882 to 1,020,277 _RS04900 ABID97_RS04905: ABID97_RS04905 - ribulose-phosphate 3-epimerase, at 1,020,349 to 1,021,041 _RS04905 ABID97_RS04910: ABID97_RS04910 - hypothetical protein, at 1,021,048 to 1,021,320 _RS04910 ABID97_RS04915: ABID97_RS04915 - succinylglutamate desuccinylase/aspartoacylase family protein, at 1,021,464 to 1,022,471 _RS04915 Position (kb) 1020 1021 1022Strain fitness (log2 ratio) -2 -1 0 1 2at 1019.504 kb on - strand, within ABID97_RS04895at 1019.759 kb on + strandat 1019.769 kb on + strandat 1019.769 kb on + strandat 1019.770 kb on - strandat 1019.770 kb on - strandat 1019.770 kb on - strandat 1019.770 kb on - strandat 1019.770 kb on - strandat 1019.985 kb on + strand, within ABID97_RS04900at 1019.985 kb on + strand, within ABID97_RS04900at 1019.985 kb on + strand, within ABID97_RS04900at 1019.985 kb on + strand, within ABID97_RS04900at 1019.985 kb on + strand, within ABID97_RS04900at 1019.986 kb on - strand, within ABID97_RS04900at 1019.986 kb on - strand, within ABID97_RS04900at 1019.986 kb on - strand, within ABID97_RS04900at 1019.986 kb on - strand, within ABID97_RS04900at 1019.986 kb on - strand, within ABID97_RS04900at 1020.190 kb on - strand, within ABID97_RS04900at 1020.190 kb on - strand, within ABID97_RS04900at 1020.201 kb on + strand, within ABID97_RS04900at 1020.201 kb on + strand, within ABID97_RS04900at 1020.201 kb on + strand, within ABID97_RS04900at 1020.201 kb on + strand, within ABID97_RS04900at 1020.201 kb on + strand, within ABID97_RS04900at 1020.201 kb on + strand, within ABID97_RS04900at 1020.202 kb on - strand, within ABID97_RS04900at 1020.202 kb on - strand, within ABID97_RS04900at 1020.202 kb on - strand, within ABID97_RS04900at 1020.238 kb on - strandat 1020.248 kb on + strandat 1020.248 kb on + strandat 1020.248 kb on + strandat 1020.249 kb on - strandat 1020.249 kb on - strandat 1020.290 kb on - strandat 1020.290 kb on - strandat 1020.475 kb on + strand, within ABID97_RS04905at 1020.476 kb on - strand, within ABID97_RS04905at 1021.039 kb on + strandat 1021.070 kb on + strandat 1021.339 kb on + strandat 1021.340 kb on - strandat 1021.404 kb on + strandat 1021.404 kb on + strandat 1021.404 kb on + strandat 1021.404 kb on + strandat 1021.405 kb on - strandat 1021.405 kb on - strandat 1021.454 kb on - strandat 1021.758 kb on + strand, within ABID97_RS04915at 1021.758 kb on + strand, within ABID97_RS04915at 1021.758 kb on + strand, within ABID97_RS04915at 1021.974 kb on + strand, within ABID97_RS04915at 1021.974 kb on + strand, within ABID97_RS04915at 1021.974 kb on + strand, within ABID97_RS04915at 1021.974 kb on + strand, within ABID97_RS04915at 1021.974 kb on + strand, within ABID97_RS04915at 1021.974 kb on + strand, within ABID97_RS04915at 1021.975 kb on - strand, within ABID97_RS04915at 1021.975 kb on - strand, within ABID97_RS04915at 1021.975 kb on - strand, within ABID97_RS04915at 1021.975 kb on - strand, within ABID97_RS04915at 1021.975 kb on - strand, within ABID97_RS04915at 1021.975 kb on - strand, within ABID97_RS04915at 1021.975 kb on - strand, within ABID97_RS04915

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,019,504 - ABID97_RS04895 0.87 +0.1
1,019,759 + +0.2
1,019,769 + -1.7
1,019,769 + -0.4
1,019,770 - -0.5
1,019,770 - -1.2
1,019,770 - -0.9
1,019,770 - +0.9
1,019,770 - -0.7
1,019,985 + ABID97_RS04900 0.26 +0.2
1,019,985 + ABID97_RS04900 0.26 +0.3
1,019,985 + ABID97_RS04900 0.26 -0.6
1,019,985 + ABID97_RS04900 0.26 +0.2
1,019,985 + ABID97_RS04900 0.26 +0.2
1,019,986 - ABID97_RS04900 0.26 -0.6
1,019,986 - ABID97_RS04900 0.26 +1.8
1,019,986 - ABID97_RS04900 0.26 -1.4
1,019,986 - ABID97_RS04900 0.26 +1.5
1,019,986 - ABID97_RS04900 0.26 +0.2
1,020,190 - ABID97_RS04900 0.78 +0.2
1,020,190 - ABID97_RS04900 0.78 -1.8
1,020,201 + ABID97_RS04900 0.81 +0.1
1,020,201 + ABID97_RS04900 0.81 -0.2
1,020,201 + ABID97_RS04900 0.81 -0.0
1,020,201 + ABID97_RS04900 0.81 +0.1
1,020,201 + ABID97_RS04900 0.81 -0.1
1,020,201 + ABID97_RS04900 0.81 +0.7
1,020,202 - ABID97_RS04900 0.81 +0.0
1,020,202 - ABID97_RS04900 0.81 -0.8
1,020,202 - ABID97_RS04900 0.81 -0.4
1,020,238 - +0.1
1,020,248 + +0.9
1,020,248 + +0.1
1,020,248 + +0.0
1,020,249 - +0.1
1,020,249 - +0.5
1,020,290 - -0.8
1,020,290 - -0.2
1,020,475 + ABID97_RS04905 0.18 -1.1
1,020,476 - ABID97_RS04905 0.18 +0.6
1,021,039 + +0.3
1,021,070 + -0.1
1,021,339 + -0.8
1,021,340 - +0.0
1,021,404 + -0.5
1,021,404 + -0.3
1,021,404 + +0.2
1,021,404 + +2.2
1,021,405 - -1.9
1,021,405 - +0.6
1,021,454 - -0.6
1,021,758 + ABID97_RS04915 0.29 -0.0
1,021,758 + ABID97_RS04915 0.29 -0.3
1,021,758 + ABID97_RS04915 0.29 -1.9
1,021,974 + ABID97_RS04915 0.51 -0.8
1,021,974 + ABID97_RS04915 0.51 -0.6
1,021,974 + ABID97_RS04915 0.51 -0.8
1,021,974 + ABID97_RS04915 0.51 +0.4
1,021,974 + ABID97_RS04915 0.51 +0.2
1,021,974 + ABID97_RS04915 0.51 -1.1
1,021,975 - ABID97_RS04915 0.51 +0.3
1,021,975 - ABID97_RS04915 0.51 +0.2
1,021,975 - ABID97_RS04915 0.51 +0.7
1,021,975 - ABID97_RS04915 0.51 -0.6
1,021,975 - ABID97_RS04915 0.51 +0.1
1,021,975 - ABID97_RS04915 0.51 +0.1
1,021,975 - ABID97_RS04915 0.51 +0.2

Or see this region's nucleotide sequence