Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04215

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04205 and ABID97_RS04210 overlap by 8 nucleotidesABID97_RS04210 and ABID97_RS04215 are separated by 51 nucleotidesABID97_RS04215 and ABID97_RS04220 are separated by 18 nucleotidesABID97_RS04220 and ABID97_RS04225 are separated by 112 nucleotidesABID97_RS04225 and ABID97_RS04230 are separated by 11 nucleotides ABID97_RS04205: ABID97_RS04205 - aminopeptidase, at 866,617 to 867,663 _RS04205 ABID97_RS04210: ABID97_RS04210 - polyhydroxyalkanoic acid system family protein, at 867,656 to 867,970 _RS04210 ABID97_RS04215: ABID97_RS04215 - CaiB/BaiF CoA-transferase family protein, at 868,022 to 869,269 _RS04215 ABID97_RS04220: ABID97_RS04220 - acyl-CoA-binding protein, at 869,288 to 869,545 _RS04220 ABID97_RS04225: ABID97_RS04225 - hypothetical protein, at 869,658 to 870,077 _RS04225 ABID97_RS04230: ABID97_RS04230 - hypothetical protein, at 870,089 to 870,925 _RS04230 Position (kb) 868 869 870Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 867.106 kb on + strand, within ABID97_RS04205at 867.106 kb on + strand, within ABID97_RS04205at 867.107 kb on - strand, within ABID97_RS04205at 867.107 kb on - strand, within ABID97_RS04205at 867.107 kb on - strand, within ABID97_RS04205at 867.107 kb on - strand, within ABID97_RS04205at 867.139 kb on + strand, within ABID97_RS04205at 867.139 kb on + strand, within ABID97_RS04205at 867.140 kb on - strand, within ABID97_RS04205at 867.140 kb on - strand, within ABID97_RS04205at 867.214 kb on + strand, within ABID97_RS04205at 867.215 kb on - strand, within ABID97_RS04205at 867.215 kb on - strand, within ABID97_RS04205at 867.215 kb on - strand, within ABID97_RS04205at 867.215 kb on - strand, within ABID97_RS04205at 867.290 kb on - strand, within ABID97_RS04205at 867.290 kb on - strand, within ABID97_RS04205at 867.419 kb on - strand, within ABID97_RS04205at 867.538 kb on + strand, within ABID97_RS04205at 867.538 kb on + strand, within ABID97_RS04205at 867.539 kb on - strand, within ABID97_RS04205at 867.539 kb on - strand, within ABID97_RS04205at 867.539 kb on - strand, within ABID97_RS04205at 867.539 kb on - strand, within ABID97_RS04205at 867.539 kb on - strand, within ABID97_RS04205at 867.539 kb on - strand, within ABID97_RS04205at 867.749 kb on + strand, within ABID97_RS04210at 867.749 kb on + strand, within ABID97_RS04210at 867.750 kb on - strand, within ABID97_RS04210at 867.767 kb on + strand, within ABID97_RS04210at 867.767 kb on + strand, within ABID97_RS04210at 868.452 kb on - strand, within ABID97_RS04215at 868.677 kb on - strand, within ABID97_RS04215at 868.719 kb on - strand, within ABID97_RS04215at 868.808 kb on + strand, within ABID97_RS04215at 868.809 kb on - strand, within ABID97_RS04215at 868.809 kb on - strand, within ABID97_RS04215at 868.970 kb on - strand, within ABID97_RS04215at 869.027 kb on + strand, within ABID97_RS04215at 869.028 kb on - strand, within ABID97_RS04215at 869.028 kb on - strand, within ABID97_RS04215at 869.028 kb on - strand, within ABID97_RS04215at 869.028 kb on - strand, within ABID97_RS04215at 869.061 kb on - strand, within ABID97_RS04215at 869.319 kb on + strand, within ABID97_RS04220at 869.320 kb on - strand, within ABID97_RS04220at 869.320 kb on - strand, within ABID97_RS04220at 869.320 kb on - strand, within ABID97_RS04220at 869.320 kb on - strand, within ABID97_RS04220at 869.320 kb on - strand, within ABID97_RS04220at 869.454 kb on + strand, within ABID97_RS04220at 869.454 kb on + strand, within ABID97_RS04220at 869.454 kb on + strand, within ABID97_RS04220at 869.455 kb on - strand, within ABID97_RS04220at 869.455 kb on - strand, within ABID97_RS04220at 869.455 kb on - strand, within ABID97_RS04220at 869.455 kb on - strand, within ABID97_RS04220at 869.576 kb on + strandat 869.577 kb on - strandat 869.583 kb on + strandat 869.622 kb on + strandat 869.622 kb on + strandat 869.622 kb on + strandat 869.622 kb on + strandat 869.623 kb on - strandat 869.623 kb on - strandat 869.623 kb on - strandat 869.623 kb on - strandat 869.623 kb on - strandat 869.997 kb on + strand, within ABID97_RS04225at 869.997 kb on + strand, within ABID97_RS04225at 869.997 kb on + strand, within ABID97_RS04225at 869.997 kb on + strand, within ABID97_RS04225at 869.997 kb on + strand, within ABID97_RS04225at 869.997 kb on + strand, within ABID97_RS04225at 869.998 kb on - strand, within ABID97_RS04225at 869.998 kb on - strand, within ABID97_RS04225at 870.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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867,106 + ABID97_RS04205 0.47 -0.6
867,106 + ABID97_RS04205 0.47 -0.6
867,107 - ABID97_RS04205 0.47 -1.5
867,107 - ABID97_RS04205 0.47 +1.1
867,107 - ABID97_RS04205 0.47 +1.4
867,107 - ABID97_RS04205 0.47 -0.9
867,139 + ABID97_RS04205 0.50 -1.0
867,139 + ABID97_RS04205 0.50 +0.1
867,140 - ABID97_RS04205 0.50 -0.9
867,140 - ABID97_RS04205 0.50 -0.7
867,214 + ABID97_RS04205 0.57 -1.1
867,215 - ABID97_RS04205 0.57 -0.2
867,215 - ABID97_RS04205 0.57 -0.3
867,215 - ABID97_RS04205 0.57 +0.5
867,215 - ABID97_RS04205 0.57 -1.9
867,290 - ABID97_RS04205 0.64 -0.1
867,290 - ABID97_RS04205 0.64 -0.8
867,419 - ABID97_RS04205 0.77 -0.6
867,538 + ABID97_RS04205 0.88 -1.3
867,538 + ABID97_RS04205 0.88 -1.0
867,539 - ABID97_RS04205 0.88 -0.2
867,539 - ABID97_RS04205 0.88 +0.0
867,539 - ABID97_RS04205 0.88 -1.3
867,539 - ABID97_RS04205 0.88 -0.3
867,539 - ABID97_RS04205 0.88 +0.8
867,539 - ABID97_RS04205 0.88 -0.5
867,749 + ABID97_RS04210 0.30 -0.4
867,749 + ABID97_RS04210 0.30 +0.2
867,750 - ABID97_RS04210 0.30 +0.1
867,767 + ABID97_RS04210 0.35 -0.4
867,767 + ABID97_RS04210 0.35 -0.4
868,452 - ABID97_RS04215 0.34 -0.7
868,677 - ABID97_RS04215 0.52 +0.8
868,719 - ABID97_RS04215 0.56 +0.2
868,808 + ABID97_RS04215 0.63 -0.6
868,809 - ABID97_RS04215 0.63 +0.2
868,809 - ABID97_RS04215 0.63 -0.6
868,970 - ABID97_RS04215 0.76 +0.6
869,027 + ABID97_RS04215 0.81 -0.5
869,028 - ABID97_RS04215 0.81 -0.3
869,028 - ABID97_RS04215 0.81 +0.4
869,028 - ABID97_RS04215 0.81 +0.2
869,028 - ABID97_RS04215 0.81 -0.4
869,061 - ABID97_RS04215 0.83 +0.3
869,319 + ABID97_RS04220 0.12 +0.5
869,320 - ABID97_RS04220 0.12 -0.9
869,320 - ABID97_RS04220 0.12 +0.2
869,320 - ABID97_RS04220 0.12 -0.9
869,320 - ABID97_RS04220 0.12 -3.1
869,320 - ABID97_RS04220 0.12 +0.8
869,454 + ABID97_RS04220 0.64 -0.8
869,454 + ABID97_RS04220 0.64 -0.1
869,454 + ABID97_RS04220 0.64 -1.7
869,455 - ABID97_RS04220 0.65 -1.0
869,455 - ABID97_RS04220 0.65 -0.2
869,455 - ABID97_RS04220 0.65 -0.2
869,455 - ABID97_RS04220 0.65 +1.5
869,576 + -0.0
869,577 - -0.7
869,583 + -0.0
869,622 + -0.0
869,622 + -1.3
869,622 + -0.3
869,622 + +0.2
869,623 - -0.0
869,623 - +0.3
869,623 - +0.3
869,623 - -1.0
869,623 - -0.0
869,997 + ABID97_RS04225 0.81 +0.9
869,997 + ABID97_RS04225 0.81 -0.4
869,997 + ABID97_RS04225 0.81 -0.4
869,997 + ABID97_RS04225 0.81 -0.9
869,997 + ABID97_RS04225 0.81 +0.8
869,997 + ABID97_RS04225 0.81 +0.3
869,998 - ABID97_RS04225 0.81 +2.1
869,998 - ABID97_RS04225 0.81 +0.2
870,172 - +0.0

Or see this region's nucleotide sequence