Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04080 and ABID97_RS04085 are separated by 28 nucleotides ABID97_RS04085 and ABID97_RS04090 are separated by 16 nucleotides ABID97_RS04090 and ABID97_RS04095 are separated by 415 nucleotides
ABID97_RS04080: ABID97_RS04080 - pyridoxal phosphate-dependent aminotransferase, at 836,985 to 838,229
_RS04080
ABID97_RS04085: ABID97_RS04085 - thiamine pyrophosphate-binding protein, at 838,258 to 839,931
_RS04085
ABID97_RS04090: ABID97_RS04090 - hypothetical protein, at 839,948 to 840,247
_RS04090
ABID97_RS04095: ABID97_RS04095 - TSUP family transporter, at 840,663 to 841,421
_RS04095
Position (kb) 838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.396 kb on + strand, within ABID97_RS04080 at 837.397 kb on - strand, within ABID97_RS04080 at 837.408 kb on + strand, within ABID97_RS04080 at 837.646 kb on - strand, within ABID97_RS04080 at 837.661 kb on - strand, within ABID97_RS04080 at 837.999 kb on + strand, within ABID97_RS04080 at 837.999 kb on + strand, within ABID97_RS04080 at 838.000 kb on - strand, within ABID97_RS04080 at 838.000 kb on - strand, within ABID97_RS04080 at 838.000 kb on - strand, within ABID97_RS04080 at 838.000 kb on - strand, within ABID97_RS04080 at 838.001 kb on + strand, within ABID97_RS04080 at 838.001 kb on + strand, within ABID97_RS04080 at 838.001 kb on + strand, within ABID97_RS04080 at 838.001 kb on + strand, within ABID97_RS04080 at 838.397 kb on + strand at 838.397 kb on + strand at 838.808 kb on - strand, within ABID97_RS04085 at 838.952 kb on - strand, within ABID97_RS04085 at 838.999 kb on + strand, within ABID97_RS04085 at 839.000 kb on - strand, within ABID97_RS04085 at 839.111 kb on - strand, within ABID97_RS04085 at 839.624 kb on - strand, within ABID97_RS04085 at 839.624 kb on - strand, within ABID97_RS04085 at 839.665 kb on + strand, within ABID97_RS04085 at 839.665 kb on + strand, within ABID97_RS04085 at 839.665 kb on + strand, within ABID97_RS04085 at 839.665 kb on + strand, within ABID97_RS04085 at 839.665 kb on + strand, within ABID97_RS04085 at 839.665 kb on + strand, within ABID97_RS04085 at 839.666 kb on - strand, within ABID97_RS04085 at 839.666 kb on - strand, within ABID97_RS04085 at 839.666 kb on - strand, within ABID97_RS04085 at 839.666 kb on - strand, within ABID97_RS04085 at 839.666 kb on - strand, within ABID97_RS04085 at 839.699 kb on - strand, within ABID97_RS04085 at 839.699 kb on - strand, within ABID97_RS04085 at 839.750 kb on - strand, within ABID97_RS04085 at 840.072 kb on + strand, within ABID97_RS04090 at 840.072 kb on + strand, within ABID97_RS04090 at 840.072 kb on + strand, within ABID97_RS04090 at 840.073 kb on - strand, within ABID97_RS04090 at 840.073 kb on - strand, within ABID97_RS04090 at 840.135 kb on + strand, within ABID97_RS04090 at 840.308 kb on + strand at 840.309 kb on - strand at 840.367 kb on + strand at 840.368 kb on - strand at 840.368 kb on - strand at 840.474 kb on + strand at 840.552 kb on + strand at 840.680 kb on - strand at 840.680 kb on - strand at 840.798 kb on - strand, within ABID97_RS04095 at 840.801 kb on - strand, within ABID97_RS04095
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 837,396 + ABID97_RS04080 0.33 +1.4 837,397 - ABID97_RS04080 0.33 -1.0 837,408 + ABID97_RS04080 0.34 -0.5 837,646 - ABID97_RS04080 0.53 +1.8 837,661 - ABID97_RS04080 0.54 -1.3 837,999 + ABID97_RS04080 0.81 +0.0 837,999 + ABID97_RS04080 0.81 -0.1 838,000 - ABID97_RS04080 0.82 -0.3 838,000 - ABID97_RS04080 0.82 -0.6 838,000 - ABID97_RS04080 0.82 -0.2 838,000 - ABID97_RS04080 0.82 +0.3 838,001 + ABID97_RS04080 0.82 -0.6 838,001 + ABID97_RS04080 0.82 -0.8 838,001 + ABID97_RS04080 0.82 -0.2 838,001 + ABID97_RS04080 0.82 -0.7 838,397 + +0.6 838,397 + +0.2 838,808 - ABID97_RS04085 0.33 -0.4 838,952 - ABID97_RS04085 0.41 +1.7 838,999 + ABID97_RS04085 0.44 +0.0 839,000 - ABID97_RS04085 0.44 -2.1 839,111 - ABID97_RS04085 0.51 -0.0 839,624 - ABID97_RS04085 0.82 +0.3 839,624 - ABID97_RS04085 0.82 -0.4 839,665 + ABID97_RS04085 0.84 +0.2 839,665 + ABID97_RS04085 0.84 -0.1 839,665 + ABID97_RS04085 0.84 -0.7 839,665 + ABID97_RS04085 0.84 -0.4 839,665 + ABID97_RS04085 0.84 -0.6 839,665 + ABID97_RS04085 0.84 -1.3 839,666 - ABID97_RS04085 0.84 -1.1 839,666 - ABID97_RS04085 0.84 -0.4 839,666 - ABID97_RS04085 0.84 -0.1 839,666 - ABID97_RS04085 0.84 -0.3 839,666 - ABID97_RS04085 0.84 -1.1 839,699 - ABID97_RS04085 0.86 +1.3 839,699 - ABID97_RS04085 0.86 -0.3 839,750 - ABID97_RS04085 0.89 +1.6 840,072 + ABID97_RS04090 0.41 +0.1 840,072 + ABID97_RS04090 0.41 -0.9 840,072 + ABID97_RS04090 0.41 -0.7 840,073 - ABID97_RS04090 0.42 +0.3 840,073 - ABID97_RS04090 0.42 +0.7 840,135 + ABID97_RS04090 0.62 -0.5 840,308 + +0.2 840,309 - -0.2 840,367 + -1.3 840,368 - +0.6 840,368 - -1.0 840,474 + -1.6 840,552 + -0.2 840,680 - -0.5 840,680 - -0.2 840,798 - ABID97_RS04095 0.18 -0.3 840,801 - ABID97_RS04095 0.18 -0.5
Or see this region's nucleotide sequence