Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03510 and ABID97_RS03515 are separated by 21 nucleotides ABID97_RS03515 and ABID97_RS03520 are separated by 34 nucleotides ABID97_RS03520 and ABID97_RS03525 are separated by 73 nucleotides
ABID97_RS03510: ABID97_RS03510 - UPF0280 family protein, at 716,163 to 717,065
_RS03510
ABID97_RS03515: ABID97_RS03515 - amino acid synthesis family protein, at 717,087 to 717,728
_RS03515
ABID97_RS03520: ABID97_RS03520 - amino acid synthesis family protein, at 717,763 to 718,347
_RS03520
ABID97_RS03525: ABID97_RS03525 - ABC transporter substrate-binding protein, at 718,421 to 719,626
_RS03525
Position (kb) 717
718
719 Strain fitness (log2 ratio) -1
0
1 at 717.008 kb on - strand at 717.055 kb on + strand at 717.094 kb on - strand at 717.096 kb on - strand at 717.097 kb on + strand at 717.098 kb on - strand at 717.321 kb on + strand, within ABID97_RS03515 at 717.438 kb on + strand, within ABID97_RS03515 at 717.567 kb on + strand, within ABID97_RS03515 at 717.567 kb on + strand, within ABID97_RS03515 at 717.567 kb on + strand, within ABID97_RS03515 at 717.567 kb on + strand, within ABID97_RS03515 at 717.568 kb on - strand, within ABID97_RS03515 at 717.568 kb on - strand, within ABID97_RS03515 at 717.568 kb on - strand, within ABID97_RS03515 at 717.568 kb on - strand, within ABID97_RS03515 at 718.388 kb on + strand at 718.388 kb on + strand at 718.389 kb on - strand at 718.389 kb on - strand at 718.529 kb on + strand at 718.529 kb on + strand at 718.529 kb on + strand at 718.529 kb on + strand at 718.529 kb on + strand at 718.529 kb on + strand at 718.530 kb on - strand at 718.559 kb on + strand, within ABID97_RS03525 at 718.838 kb on + strand, within ABID97_RS03525 at 718.838 kb on + strand, within ABID97_RS03525 at 718.838 kb on + strand, within ABID97_RS03525 at 718.865 kb on + strand, within ABID97_RS03525 at 718.865 kb on + strand, within ABID97_RS03525 at 718.865 kb on + strand, within ABID97_RS03525 at 718.865 kb on + strand, within ABID97_RS03525 at 718.865 kb on + strand, within ABID97_RS03525 at 718.866 kb on - strand, within ABID97_RS03525 at 718.866 kb on - strand, within ABID97_RS03525 at 718.941 kb on - strand, within ABID97_RS03525 at 718.941 kb on - strand, within ABID97_RS03525 at 718.941 kb on - strand, within ABID97_RS03525 at 718.941 kb on - strand, within ABID97_RS03525 at 718.947 kb on - strand, within ABID97_RS03525 at 719.204 kb on + strand, within ABID97_RS03525 at 719.265 kb on - strand, within ABID97_RS03525 at 719.306 kb on + strand, within ABID97_RS03525 at 719.319 kb on - strand, within ABID97_RS03525 at 719.319 kb on - strand, within ABID97_RS03525
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 717,008 - +0.4 717,055 + -1.4 717,094 - -0.6 717,096 - -0.1 717,097 + -0.1 717,098 - -0.6 717,321 + ABID97_RS03515 0.36 +0.8 717,438 + ABID97_RS03515 0.55 +1.0 717,567 + ABID97_RS03515 0.75 +0.3 717,567 + ABID97_RS03515 0.75 +0.3 717,567 + ABID97_RS03515 0.75 -0.1 717,567 + ABID97_RS03515 0.75 +0.6 717,568 - ABID97_RS03515 0.75 +0.8 717,568 - ABID97_RS03515 0.75 +1.0 717,568 - ABID97_RS03515 0.75 +0.7 717,568 - ABID97_RS03515 0.75 +0.4 718,388 + +0.3 718,388 + -0.2 718,389 - +0.4 718,389 - -1.1 718,529 + +0.1 718,529 + -0.2 718,529 + +0.2 718,529 + +1.5 718,529 + -0.3 718,529 + +0.0 718,530 - -1.1 718,559 + ABID97_RS03525 0.11 +0.6 718,838 + ABID97_RS03525 0.35 -0.7 718,838 + ABID97_RS03525 0.35 +0.3 718,838 + ABID97_RS03525 0.35 -0.2 718,865 + ABID97_RS03525 0.37 +0.1 718,865 + ABID97_RS03525 0.37 -0.3 718,865 + ABID97_RS03525 0.37 +0.1 718,865 + ABID97_RS03525 0.37 -0.2 718,865 + ABID97_RS03525 0.37 -0.5 718,866 - ABID97_RS03525 0.37 -0.2 718,866 - ABID97_RS03525 0.37 +0.2 718,941 - ABID97_RS03525 0.43 +1.1 718,941 - ABID97_RS03525 0.43 -0.6 718,941 - ABID97_RS03525 0.43 -0.2 718,941 - ABID97_RS03525 0.43 -1.1 718,947 - ABID97_RS03525 0.44 +0.1 719,204 + ABID97_RS03525 0.65 -0.3 719,265 - ABID97_RS03525 0.70 +1.6 719,306 + ABID97_RS03525 0.73 -0.6 719,319 - ABID97_RS03525 0.74 -0.2 719,319 - ABID97_RS03525 0.74 -0.6
Or see this region's nucleotide sequence