Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02170

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02165 and ABID97_RS02170 are separated by 14 nucleotidesABID97_RS02170 and ABID97_RS02175 overlap by 4 nucleotidesABID97_RS02175 and ABID97_RS02180 overlap by 4 nucleotides ABID97_RS02165: ABID97_RS02165 - glycosyltransferase, at 436,428 to 437,525 _RS02165 ABID97_RS02170: ABID97_RS02170 - hypothetical protein, at 437,540 to 438,730 _RS02170 ABID97_RS02175: ABID97_RS02175 - class I SAM-dependent methyltransferase, at 438,727 to 439,575 _RS02175 ABID97_RS02180: ABID97_RS02180 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 439,572 to 440,678 _RS02180 Position (kb) 437 438 439Strain fitness (log2 ratio) -1 0 1 2 3at 436.612 kb on - strand, within ABID97_RS02165at 436.638 kb on + strand, within ABID97_RS02165at 436.656 kb on + strand, within ABID97_RS02165at 436.656 kb on + strand, within ABID97_RS02165at 436.656 kb on + strand, within ABID97_RS02165at 436.657 kb on - strand, within ABID97_RS02165at 436.657 kb on - strand, within ABID97_RS02165at 436.747 kb on + strand, within ABID97_RS02165at 436.747 kb on + strand, within ABID97_RS02165at 436.748 kb on - strand, within ABID97_RS02165at 436.748 kb on - strand, within ABID97_RS02165at 436.748 kb on - strand, within ABID97_RS02165at 436.748 kb on - strand, within ABID97_RS02165at 436.771 kb on - strand, within ABID97_RS02165at 436.966 kb on + strand, within ABID97_RS02165at 436.966 kb on + strand, within ABID97_RS02165at 436.966 kb on + strand, within ABID97_RS02165at 436.967 kb on - strand, within ABID97_RS02165at 436.967 kb on - strand, within ABID97_RS02165at 436.967 kb on - strand, within ABID97_RS02165at 437.206 kb on + strand, within ABID97_RS02165at 437.206 kb on + strand, within ABID97_RS02165at 437.206 kb on + strand, within ABID97_RS02165at 437.206 kb on + strand, within ABID97_RS02165at 437.207 kb on - strand, within ABID97_RS02165at 437.207 kb on - strand, within ABID97_RS02165at 437.207 kb on - strand, within ABID97_RS02165at 437.253 kb on + strand, within ABID97_RS02165at 437.298 kb on + strand, within ABID97_RS02165at 437.299 kb on - strand, within ABID97_RS02165at 437.511 kb on + strandat 437.512 kb on - strandat 437.613 kb on - strandat 437.681 kb on + strand, within ABID97_RS02170at 437.693 kb on + strand, within ABID97_RS02170at 437.694 kb on - strand, within ABID97_RS02170at 437.805 kb on + strand, within ABID97_RS02170at 437.806 kb on - strand, within ABID97_RS02170at 437.806 kb on - strand, within ABID97_RS02170at 437.917 kb on + strand, within ABID97_RS02170at 437.917 kb on + strand, within ABID97_RS02170at 437.918 kb on - strand, within ABID97_RS02170at 437.961 kb on + strand, within ABID97_RS02170at 437.961 kb on + strand, within ABID97_RS02170at 437.961 kb on + strand, within ABID97_RS02170at 437.961 kb on + strand, within ABID97_RS02170at 437.962 kb on - strand, within ABID97_RS02170at 437.962 kb on - strand, within ABID97_RS02170at 438.044 kb on + strand, within ABID97_RS02170at 438.233 kb on + strand, within ABID97_RS02170at 438.233 kb on + strand, within ABID97_RS02170at 438.233 kb on + strand, within ABID97_RS02170at 438.233 kb on + strand, within ABID97_RS02170at 438.234 kb on - strand, within ABID97_RS02170at 438.234 kb on - strand, within ABID97_RS02170at 438.234 kb on - strand, within ABID97_RS02170at 438.287 kb on + strand, within ABID97_RS02170at 438.287 kb on + strand, within ABID97_RS02170at 438.317 kb on + strand, within ABID97_RS02170at 438.318 kb on - strand, within ABID97_RS02170at 438.323 kb on - strand, within ABID97_RS02170at 438.407 kb on + strand, within ABID97_RS02170at 438.450 kb on + strand, within ABID97_RS02170at 438.451 kb on - strand, within ABID97_RS02170at 438.451 kb on - strand, within ABID97_RS02170at 438.451 kb on - strand, within ABID97_RS02170at 438.476 kb on + strand, within ABID97_RS02170at 438.477 kb on - strand, within ABID97_RS02170at 438.484 kb on + strand, within ABID97_RS02170at 438.484 kb on + strand, within ABID97_RS02170at 438.484 kb on + strand, within ABID97_RS02170at 438.485 kb on - strand, within ABID97_RS02170at 438.488 kb on + strand, within ABID97_RS02170at 438.488 kb on + strand, within ABID97_RS02170at 438.537 kb on + strand, within ABID97_RS02170at 438.538 kb on - strand, within ABID97_RS02170at 438.590 kb on + strand, within ABID97_RS02170at 438.591 kb on - strand, within ABID97_RS02170at 438.755 kb on - strandat 438.755 kb on - strandat 438.755 kb on - strandat 438.902 kb on + strand, within ABID97_RS02175at 438.902 kb on + strand, within ABID97_RS02175at 438.903 kb on - strand, within ABID97_RS02175at 438.903 kb on - strand, within ABID97_RS02175at 438.959 kb on + strand, within ABID97_RS02175at 438.960 kb on - strand, within ABID97_RS02175at 438.960 kb on - strand, within ABID97_RS02175at 438.960 kb on - strand, within ABID97_RS02175at 439.077 kb on + strand, within ABID97_RS02175at 439.077 kb on + strand, within ABID97_RS02175at 439.077 kb on + strand, within ABID97_RS02175at 439.078 kb on - strand, within ABID97_RS02175at 439.285 kb on - strand, within ABID97_RS02175at 439.285 kb on - strand, within ABID97_RS02175at 439.345 kb on - strand, within ABID97_RS02175at 439.355 kb on - strand, within ABID97_RS02175at 439.363 kb on + strand, within ABID97_RS02175at 439.363 kb on + strand, within ABID97_RS02175at 439.364 kb on - strand, within ABID97_RS02175at 439.364 kb on - strand, within ABID97_RS02175at 439.364 kb on - strand, within ABID97_RS02175at 439.435 kb on - strand, within ABID97_RS02175at 439.454 kb on + strand, within ABID97_RS02175at 439.455 kb on - strand, within ABID97_RS02175at 439.455 kb on - strand, within ABID97_RS02175at 439.455 kb on - strand, within ABID97_RS02175at 439.455 kb on - strand, within ABID97_RS02175at 439.481 kb on + strand, within ABID97_RS02175at 439.481 kb on + strand, within ABID97_RS02175at 439.481 kb on + strand, within ABID97_RS02175at 439.482 kb on - strand, within ABID97_RS02175at 439.500 kb on - strandat 439.563 kb on + strandat 439.563 kb on + strandat 439.563 kb on + strandat 439.564 kb on - strandat 439.564 kb on - strandat 439.564 kb on - strandat 439.663 kb on - strandat 439.723 kb on + strand, within ABID97_RS02180at 439.723 kb on + strand, within ABID97_RS02180at 439.724 kb on - strand, within ABID97_RS02180

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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436,612 - ABID97_RS02165 0.17 +0.3
436,638 + ABID97_RS02165 0.19 +0.7
436,656 + ABID97_RS02165 0.21 +0.4
436,656 + ABID97_RS02165 0.21 +0.3
436,656 + ABID97_RS02165 0.21 +0.9
436,657 - ABID97_RS02165 0.21 +0.1
436,657 - ABID97_RS02165 0.21 +0.9
436,747 + ABID97_RS02165 0.29 +0.3
436,747 + ABID97_RS02165 0.29 +1.3
436,748 - ABID97_RS02165 0.29 -0.0
436,748 - ABID97_RS02165 0.29 +0.2
436,748 - ABID97_RS02165 0.29 +1.2
436,748 - ABID97_RS02165 0.29 -0.1
436,771 - ABID97_RS02165 0.31 +2.6
436,966 + ABID97_RS02165 0.49 +1.2
436,966 + ABID97_RS02165 0.49 +0.6
436,966 + ABID97_RS02165 0.49 +0.4
436,967 - ABID97_RS02165 0.49 +0.8
436,967 - ABID97_RS02165 0.49 +0.3
436,967 - ABID97_RS02165 0.49 +0.0
437,206 + ABID97_RS02165 0.71 +0.3
437,206 + ABID97_RS02165 0.71 +0.8
437,206 + ABID97_RS02165 0.71 +0.4
437,206 + ABID97_RS02165 0.71 +0.5
437,207 - ABID97_RS02165 0.71 -0.3
437,207 - ABID97_RS02165 0.71 +0.5
437,207 - ABID97_RS02165 0.71 -0.6
437,253 + ABID97_RS02165 0.75 +0.6
437,298 + ABID97_RS02165 0.79 +0.7
437,299 - ABID97_RS02165 0.79 -0.4
437,511 + +0.5
437,512 - +0.1
437,613 - +2.8
437,681 + ABID97_RS02170 0.12 +1.2
437,693 + ABID97_RS02170 0.13 +1.5
437,694 - ABID97_RS02170 0.13 +1.1
437,805 + ABID97_RS02170 0.22 +1.3
437,806 - ABID97_RS02170 0.22 +1.0
437,806 - ABID97_RS02170 0.22 +1.0
437,917 + ABID97_RS02170 0.32 +1.2
437,917 + ABID97_RS02170 0.32 +2.5
437,918 - ABID97_RS02170 0.32 +1.6
437,961 + ABID97_RS02170 0.35 +0.9
437,961 + ABID97_RS02170 0.35 +1.0
437,961 + ABID97_RS02170 0.35 +1.5
437,961 + ABID97_RS02170 0.35 +1.4
437,962 - ABID97_RS02170 0.35 +1.6
437,962 - ABID97_RS02170 0.35 +1.4
438,044 + ABID97_RS02170 0.42 +1.6
438,233 + ABID97_RS02170 0.58 +3.6
438,233 + ABID97_RS02170 0.58 +1.8
438,233 + ABID97_RS02170 0.58 +1.4
438,233 + ABID97_RS02170 0.58 +1.9
438,234 - ABID97_RS02170 0.58 +1.8
438,234 - ABID97_RS02170 0.58 +1.3
438,234 - ABID97_RS02170 0.58 +1.6
438,287 + ABID97_RS02170 0.63 +2.8
438,287 + ABID97_RS02170 0.63 +1.6
438,317 + ABID97_RS02170 0.65 +1.6
438,318 - ABID97_RS02170 0.65 +0.4
438,323 - ABID97_RS02170 0.66 +0.9
438,407 + ABID97_RS02170 0.73 +2.6
438,450 + ABID97_RS02170 0.76 +1.6
438,451 - ABID97_RS02170 0.76 -1.0
438,451 - ABID97_RS02170 0.76 +1.4
438,451 - ABID97_RS02170 0.76 +1.1
438,476 + ABID97_RS02170 0.79 +0.4
438,477 - ABID97_RS02170 0.79 -0.8
438,484 + ABID97_RS02170 0.79 +1.6
438,484 + ABID97_RS02170 0.79 +1.1
438,484 + ABID97_RS02170 0.79 +1.4
438,485 - ABID97_RS02170 0.79 +1.5
438,488 + ABID97_RS02170 0.80 +1.8
438,488 + ABID97_RS02170 0.80 +1.5
438,537 + ABID97_RS02170 0.84 +1.4
438,538 - ABID97_RS02170 0.84 +1.6
438,590 + ABID97_RS02170 0.88 +1.1
438,591 - ABID97_RS02170 0.88 +1.5
438,755 - -1.4
438,755 - +0.2
438,755 - +0.1
438,902 + ABID97_RS02175 0.21 +1.4
438,902 + ABID97_RS02175 0.21 +1.3
438,903 - ABID97_RS02175 0.21 +1.2
438,903 - ABID97_RS02175 0.21 -0.6
438,959 + ABID97_RS02175 0.27 +1.0
438,960 - ABID97_RS02175 0.27 +1.1
438,960 - ABID97_RS02175 0.27 +0.3
438,960 - ABID97_RS02175 0.27 +0.6
439,077 + ABID97_RS02175 0.41 +0.8
439,077 + ABID97_RS02175 0.41 +1.0
439,077 + ABID97_RS02175 0.41 +1.0
439,078 - ABID97_RS02175 0.41 +1.1
439,285 - ABID97_RS02175 0.66 +0.4
439,285 - ABID97_RS02175 0.66 -0.1
439,345 - ABID97_RS02175 0.73 +0.5
439,355 - ABID97_RS02175 0.74 -1.4
439,363 + ABID97_RS02175 0.75 -0.4
439,363 + ABID97_RS02175 0.75 -0.0
439,364 - ABID97_RS02175 0.75 +1.7
439,364 - ABID97_RS02175 0.75 +0.2
439,364 - ABID97_RS02175 0.75 +0.2
439,435 - ABID97_RS02175 0.83 +1.5
439,454 + ABID97_RS02175 0.86 -0.4
439,455 - ABID97_RS02175 0.86 +0.8
439,455 - ABID97_RS02175 0.86 +0.2
439,455 - ABID97_RS02175 0.86 -0.6
439,455 - ABID97_RS02175 0.86 +1.1
439,481 + ABID97_RS02175 0.89 +1.3
439,481 + ABID97_RS02175 0.89 +0.6
439,481 + ABID97_RS02175 0.89 +1.4
439,482 - ABID97_RS02175 0.89 -0.4
439,500 - +0.9
439,563 + -0.2
439,563 + -0.0
439,563 + +0.2
439,564 - -0.6
439,564 - -0.4
439,564 - -0.1
439,663 - -0.0
439,723 + ABID97_RS02180 0.14 +0.2
439,723 + ABID97_RS02180 0.14 +1.2
439,724 - ABID97_RS02180 0.14 +0.7

Or see this region's nucleotide sequence