Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01730 and ABID97_RS01735 are separated by 102 nucleotides ABID97_RS01735 and ABID97_RS01740 are separated by 64 nucleotides
ABID97_RS01730: ABID97_RS01730 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 339,012 to 339,917
_RS01730
ABID97_RS01735: ABID97_RS01735 - class II fructose-bisphosphate aldolase, at 340,020 to 341,084
_RS01735
ABID97_RS01740: ABID97_RS01740 - alpha/beta hydrolase, at 341,149 to 342,087
_RS01740
Position (kb) 340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 339.929 kb on + strand at 341.499 kb on - strand, within ABID97_RS01740 at 341.594 kb on + strand, within ABID97_RS01740 at 341.594 kb on + strand, within ABID97_RS01740 at 341.595 kb on - strand, within ABID97_RS01740 at 341.621 kb on + strand, within ABID97_RS01740 at 341.621 kb on + strand, within ABID97_RS01740 at 341.621 kb on + strand, within ABID97_RS01740 at 341.621 kb on + strand, within ABID97_RS01740 at 341.622 kb on - strand, within ABID97_RS01740 at 341.622 kb on - strand, within ABID97_RS01740 at 341.622 kb on - strand, within ABID97_RS01740 at 341.622 kb on - strand, within ABID97_RS01740 at 341.622 kb on - strand, within ABID97_RS01740 at 341.708 kb on + strand, within ABID97_RS01740 at 341.732 kb on + strand, within ABID97_RS01740 at 341.885 kb on + strand, within ABID97_RS01740 at 341.942 kb on + strand, within ABID97_RS01740 at 341.942 kb on + strand, within ABID97_RS01740 at 341.943 kb on - strand, within ABID97_RS01740 at 341.943 kb on - strand, within ABID97_RS01740 at 341.943 kb on - strand, within ABID97_RS01740 at 342.069 kb on + strand at 342.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 339,929 + -2.3 341,499 - ABID97_RS01740 0.37 +0.8 341,594 + ABID97_RS01740 0.47 -0.5 341,594 + ABID97_RS01740 0.47 +0.2 341,595 - ABID97_RS01740 0.47 -0.2 341,621 + ABID97_RS01740 0.50 -0.1 341,621 + ABID97_RS01740 0.50 +0.8 341,621 + ABID97_RS01740 0.50 -0.2 341,621 + ABID97_RS01740 0.50 -0.3 341,622 - ABID97_RS01740 0.50 -0.4 341,622 - ABID97_RS01740 0.50 +0.5 341,622 - ABID97_RS01740 0.50 -0.6 341,622 - ABID97_RS01740 0.50 +0.8 341,622 - ABID97_RS01740 0.50 -0.1 341,708 + ABID97_RS01740 0.60 +0.8 341,732 + ABID97_RS01740 0.62 +0.2 341,885 + ABID97_RS01740 0.78 -0.3 341,942 + ABID97_RS01740 0.84 -0.6 341,942 + ABID97_RS01740 0.84 +0.1 341,943 - ABID97_RS01740 0.85 +0.2 341,943 - ABID97_RS01740 0.85 +0.2 341,943 - ABID97_RS01740 0.85 -0.2 342,069 + -2.8 342,076 - +0.3
Or see this region's nucleotide sequence