Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00700 and ABID97_RS00705 are separated by 72 nucleotides ABID97_RS00705 and ABID97_RS00710 are separated by 44 nucleotides ABID97_RS00710 and ABID97_RS00715 are separated by 14 nucleotides ABID97_RS00715 and ABID97_RS00720 are separated by 399 nucleotides
ABID97_RS00700: ABID97_RS00700 - alpha/beta fold hydrolase, at 140,408 to 141,046
_RS00700
ABID97_RS00705: ABID97_RS00705 - (2Fe-2S) ferredoxin domain-containing protein, at 141,119 to 141,472
_RS00705
ABID97_RS00710: ABID97_RS00710 - VanZ family protein, at 141,517 to 142,632
_RS00710
ABID97_RS00715: ABID97_RS00715 - CopD family protein, at 142,647 to 143,075
_RS00715
ABID97_RS00720: ABID97_RS00720 - porphobilinogen synthase, at 143,475 to 144,464
_RS00720
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 141.093 kb on + strand at 141.093 kb on + strand at 141.094 kb on - strand at 141.094 kb on - strand at 141.222 kb on + strand, within ABID97_RS00705 at 141.222 kb on + strand, within ABID97_RS00705 at 141.222 kb on + strand, within ABID97_RS00705 at 141.223 kb on - strand, within ABID97_RS00705 at 141.223 kb on - strand, within ABID97_RS00705 at 141.223 kb on - strand, within ABID97_RS00705 at 141.424 kb on + strand, within ABID97_RS00705 at 141.425 kb on - strand, within ABID97_RS00705 at 141.425 kb on - strand, within ABID97_RS00705 at 141.425 kb on - strand, within ABID97_RS00705 at 141.435 kb on + strand, within ABID97_RS00705 at 141.438 kb on + strand at 141.439 kb on - strand at 141.560 kb on + strand at 141.560 kb on + strand at 141.560 kb on + strand at 141.560 kb on + strand at 141.561 kb on - strand at 141.663 kb on - strand, within ABID97_RS00710 at 141.663 kb on - strand, within ABID97_RS00710 at 141.663 kb on - strand, within ABID97_RS00710 at 141.836 kb on + strand, within ABID97_RS00710 at 141.836 kb on + strand, within ABID97_RS00710 at 141.836 kb on + strand, within ABID97_RS00710 at 141.837 kb on - strand, within ABID97_RS00710 at 141.837 kb on - strand, within ABID97_RS00710 at 142.272 kb on + strand, within ABID97_RS00710 at 142.272 kb on + strand, within ABID97_RS00710 at 142.273 kb on - strand, within ABID97_RS00710 at 142.316 kb on + strand, within ABID97_RS00710 at 142.316 kb on + strand, within ABID97_RS00710 at 142.316 kb on + strand, within ABID97_RS00710 at 142.316 kb on + strand, within ABID97_RS00710 at 142.317 kb on - strand, within ABID97_RS00710 at 142.317 kb on - strand, within ABID97_RS00710 at 142.317 kb on - strand, within ABID97_RS00710 at 142.317 kb on - strand, within ABID97_RS00710 at 142.487 kb on + strand, within ABID97_RS00710 at 142.488 kb on - strand, within ABID97_RS00710 at 142.488 kb on - strand, within ABID97_RS00710 at 142.488 kb on - strand, within ABID97_RS00710 at 142.511 kb on + strand, within ABID97_RS00710 at 142.511 kb on + strand, within ABID97_RS00710 at 142.511 kb on + strand, within ABID97_RS00710 at 142.512 kb on - strand, within ABID97_RS00710 at 142.512 kb on - strand, within ABID97_RS00710 at 142.556 kb on + strand at 142.569 kb on - strand at 142.569 kb on - strand at 142.569 kb on - strand at 142.569 kb on - strand at 142.587 kb on - strand at 143.087 kb on + strand at 143.365 kb on - strand at 143.444 kb on + strand at 143.444 kb on + strand at 143.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 141,093 + -0.6 141,093 + +0.2 141,094 - -1.5 141,094 - -0.1 141,222 + ABID97_RS00705 0.29 +0.2 141,222 + ABID97_RS00705 0.29 +0.0 141,222 + ABID97_RS00705 0.29 +0.2 141,223 - ABID97_RS00705 0.29 +0.6 141,223 - ABID97_RS00705 0.29 -0.5 141,223 - ABID97_RS00705 0.29 +0.0 141,424 + ABID97_RS00705 0.86 +0.2 141,425 - ABID97_RS00705 0.86 +1.1 141,425 - ABID97_RS00705 0.86 +1.4 141,425 - ABID97_RS00705 0.86 +0.5 141,435 + ABID97_RS00705 0.89 -1.0 141,438 + -0.2 141,439 - +0.2 141,560 + +0.7 141,560 + -2.0 141,560 + -0.9 141,560 + +0.3 141,561 - +0.2 141,663 - ABID97_RS00710 0.13 -0.7 141,663 - ABID97_RS00710 0.13 -1.3 141,663 - ABID97_RS00710 0.13 -0.1 141,836 + ABID97_RS00710 0.29 +0.1 141,836 + ABID97_RS00710 0.29 -0.3 141,836 + ABID97_RS00710 0.29 -1.5 141,837 - ABID97_RS00710 0.29 -1.0 141,837 - ABID97_RS00710 0.29 -0.2 142,272 + ABID97_RS00710 0.68 +1.0 142,272 + ABID97_RS00710 0.68 +0.5 142,273 - ABID97_RS00710 0.68 -0.2 142,316 + ABID97_RS00710 0.72 -0.6 142,316 + ABID97_RS00710 0.72 -0.6 142,316 + ABID97_RS00710 0.72 -0.4 142,316 + ABID97_RS00710 0.72 +1.2 142,317 - ABID97_RS00710 0.72 -1.1 142,317 - ABID97_RS00710 0.72 -1.2 142,317 - ABID97_RS00710 0.72 +2.2 142,317 - ABID97_RS00710 0.72 -0.7 142,487 + ABID97_RS00710 0.87 +0.8 142,488 - ABID97_RS00710 0.87 -0.3 142,488 - ABID97_RS00710 0.87 -1.3 142,488 - ABID97_RS00710 0.87 +0.6 142,511 + ABID97_RS00710 0.89 -0.7 142,511 + ABID97_RS00710 0.89 -0.0 142,511 + ABID97_RS00710 0.89 -1.3 142,512 - ABID97_RS00710 0.89 -0.7 142,512 - ABID97_RS00710 0.89 +0.6 142,556 + -0.8 142,569 - -0.3 142,569 - -0.3 142,569 - -0.4 142,569 - -0.5 142,587 - -1.0 143,087 + -0.0 143,365 - +0.2 143,444 + -1.3 143,444 + -0.7 143,445 - -0.1
Or see this region's nucleotide sequence