Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00695 and ABID97_RS00700 are separated by 42 nucleotides ABID97_RS00700 and ABID97_RS00705 are separated by 72 nucleotides ABID97_RS00705 and ABID97_RS00710 are separated by 44 nucleotides
ABID97_RS00695: ABID97_RS00695 - D-alanyl-D-alanine carboxypeptidase family protein, at 139,196 to 140,365
_RS00695
ABID97_RS00700: ABID97_RS00700 - alpha/beta fold hydrolase, at 140,408 to 141,046
_RS00700
ABID97_RS00705: ABID97_RS00705 - (2Fe-2S) ferredoxin domain-containing protein, at 141,119 to 141,472
_RS00705
ABID97_RS00710: ABID97_RS00710 - VanZ family protein, at 141,517 to 142,632
_RS00710
Position (kb) 140
141
142 Strain fitness (log2 ratio) -2
-1
0
1 at 139.519 kb on - strand, within ABID97_RS00695 at 139.767 kb on + strand, within ABID97_RS00695 at 139.767 kb on + strand, within ABID97_RS00695 at 139.767 kb on + strand, within ABID97_RS00695 at 139.767 kb on + strand, within ABID97_RS00695 at 139.768 kb on - strand, within ABID97_RS00695 at 139.768 kb on - strand, within ABID97_RS00695 at 139.768 kb on - strand, within ABID97_RS00695 at 139.768 kb on - strand, within ABID97_RS00695 at 139.782 kb on + strand, within ABID97_RS00695 at 139.782 kb on + strand, within ABID97_RS00695 at 139.783 kb on - strand, within ABID97_RS00695 at 139.785 kb on + strand, within ABID97_RS00695 at 139.786 kb on - strand, within ABID97_RS00695 at 139.786 kb on - strand, within ABID97_RS00695 at 139.786 kb on - strand, within ABID97_RS00695 at 139.890 kb on + strand, within ABID97_RS00695 at 139.891 kb on - strand, within ABID97_RS00695 at 139.891 kb on - strand, within ABID97_RS00695 at 139.891 kb on - strand, within ABID97_RS00695 at 139.891 kb on - strand, within ABID97_RS00695 at 140.157 kb on + strand, within ABID97_RS00695 at 140.157 kb on + strand, within ABID97_RS00695 at 140.157 kb on + strand, within ABID97_RS00695 at 140.157 kb on + strand, within ABID97_RS00695 at 140.158 kb on - strand, within ABID97_RS00695 at 140.253 kb on + strand at 140.253 kb on + strand at 140.254 kb on - strand at 140.254 kb on - strand at 140.254 kb on - strand at 141.093 kb on + strand at 141.093 kb on + strand at 141.094 kb on - strand at 141.094 kb on - strand at 141.222 kb on + strand, within ABID97_RS00705 at 141.222 kb on + strand, within ABID97_RS00705 at 141.222 kb on + strand, within ABID97_RS00705 at 141.223 kb on - strand, within ABID97_RS00705 at 141.223 kb on - strand, within ABID97_RS00705 at 141.223 kb on - strand, within ABID97_RS00705 at 141.424 kb on + strand, within ABID97_RS00705 at 141.425 kb on - strand, within ABID97_RS00705 at 141.425 kb on - strand, within ABID97_RS00705 at 141.425 kb on - strand, within ABID97_RS00705 at 141.435 kb on + strand, within ABID97_RS00705 at 141.438 kb on + strand at 141.439 kb on - strand at 141.560 kb on + strand at 141.560 kb on + strand at 141.560 kb on + strand at 141.560 kb on + strand at 141.561 kb on - strand at 141.663 kb on - strand, within ABID97_RS00710 at 141.663 kb on - strand, within ABID97_RS00710 at 141.663 kb on - strand, within ABID97_RS00710 at 141.836 kb on + strand, within ABID97_RS00710 at 141.836 kb on + strand, within ABID97_RS00710 at 141.836 kb on + strand, within ABID97_RS00710 at 141.837 kb on - strand, within ABID97_RS00710 at 141.837 kb on - strand, within ABID97_RS00710
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 139,519 - ABID97_RS00695 0.28 -0.5 139,767 + ABID97_RS00695 0.49 +0.1 139,767 + ABID97_RS00695 0.49 -0.0 139,767 + ABID97_RS00695 0.49 +0.9 139,767 + ABID97_RS00695 0.49 -0.1 139,768 - ABID97_RS00695 0.49 +0.1 139,768 - ABID97_RS00695 0.49 -0.9 139,768 - ABID97_RS00695 0.49 -0.2 139,768 - ABID97_RS00695 0.49 -0.3 139,782 + ABID97_RS00695 0.50 -0.4 139,782 + ABID97_RS00695 0.50 -0.1 139,783 - ABID97_RS00695 0.50 +0.6 139,785 + ABID97_RS00695 0.50 -0.7 139,786 - ABID97_RS00695 0.50 +0.1 139,786 - ABID97_RS00695 0.50 +0.3 139,786 - ABID97_RS00695 0.50 -0.4 139,890 + ABID97_RS00695 0.59 -0.6 139,891 - ABID97_RS00695 0.59 +0.4 139,891 - ABID97_RS00695 0.59 +1.5 139,891 - ABID97_RS00695 0.59 -0.4 139,891 - ABID97_RS00695 0.59 +0.0 140,157 + ABID97_RS00695 0.82 -1.0 140,157 + ABID97_RS00695 0.82 -0.1 140,157 + ABID97_RS00695 0.82 +0.3 140,157 + ABID97_RS00695 0.82 -0.2 140,158 - ABID97_RS00695 0.82 -2.2 140,253 + +0.0 140,253 + -1.2 140,254 - -0.3 140,254 - +0.4 140,254 - -0.5 141,093 + -0.6 141,093 + +0.2 141,094 - -1.5 141,094 - -0.1 141,222 + ABID97_RS00705 0.29 +0.2 141,222 + ABID97_RS00705 0.29 +0.0 141,222 + ABID97_RS00705 0.29 +0.2 141,223 - ABID97_RS00705 0.29 +0.6 141,223 - ABID97_RS00705 0.29 -0.5 141,223 - ABID97_RS00705 0.29 +0.0 141,424 + ABID97_RS00705 0.86 +0.2 141,425 - ABID97_RS00705 0.86 +1.1 141,425 - ABID97_RS00705 0.86 +1.4 141,425 - ABID97_RS00705 0.86 +0.5 141,435 + ABID97_RS00705 0.89 -1.0 141,438 + -0.2 141,439 - +0.2 141,560 + +0.7 141,560 + -2.0 141,560 + -0.9 141,560 + +0.3 141,561 - +0.2 141,663 - ABID97_RS00710 0.13 -0.7 141,663 - ABID97_RS00710 0.13 -1.3 141,663 - ABID97_RS00710 0.13 -0.1 141,836 + ABID97_RS00710 0.29 +0.1 141,836 + ABID97_RS00710 0.29 -0.3 141,836 + ABID97_RS00710 0.29 -1.5 141,837 - ABID97_RS00710 0.29 -1.0 141,837 - ABID97_RS00710 0.29 -0.2
Or see this region's nucleotide sequence