Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00345 and ABID97_RS00350 are separated by 21 nucleotides ABID97_RS00350 and ABID97_RS00355 are separated by 46 nucleotides ABID97_RS00355 and ABID97_RS00360 are separated by 46 nucleotides ABID97_RS00360 and ABID97_RS00365 are separated by 12 nucleotides
ABID97_RS00345: ABID97_RS00345 - alpha/beta fold hydrolase, at 78,652 to 79,662
_RS00345
ABID97_RS00350: ABID97_RS00350 - nuclear transport factor 2 family protein, at 79,684 to 80,136
_RS00350
ABID97_RS00355: ABID97_RS00355 - hypothetical protein, at 80,183 to 80,959
_RS00355
ABID97_RS00360: ABID97_RS00360 - LemA family protein, at 81,006 to 81,608
_RS00360
ABID97_RS00365: ABID97_RS00365 - TPM domain-containing protein, at 81,621 to 82,550
_RS00365
Position (kb) 80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 79.334 kb on + strand, within ABID97_RS00345 at 79.334 kb on + strand, within ABID97_RS00345 at 79.335 kb on - strand, within ABID97_RS00345 at 79.436 kb on + strand, within ABID97_RS00345 at 79.436 kb on + strand, within ABID97_RS00345 at 79.436 kb on + strand, within ABID97_RS00345 at 79.436 kb on + strand, within ABID97_RS00345 at 79.437 kb on - strand, within ABID97_RS00345 at 79.437 kb on - strand, within ABID97_RS00345 at 79.437 kb on - strand, within ABID97_RS00345 at 79.437 kb on - strand, within ABID97_RS00345 at 79.598 kb on + strand at 79.598 kb on + strand at 79.598 kb on + strand at 79.598 kb on + strand at 79.787 kb on + strand, within ABID97_RS00350 at 79.787 kb on + strand, within ABID97_RS00350 at 79.787 kb on + strand, within ABID97_RS00350 at 79.787 kb on + strand, within ABID97_RS00350 at 79.788 kb on - strand, within ABID97_RS00350 at 80.066 kb on + strand, within ABID97_RS00350 at 80.066 kb on + strand, within ABID97_RS00350 at 80.066 kb on + strand, within ABID97_RS00350 at 80.066 kb on + strand, within ABID97_RS00350 at 80.066 kb on + strand, within ABID97_RS00350 at 80.066 kb on + strand, within ABID97_RS00350 at 80.067 kb on - strand, within ABID97_RS00350 at 80.067 kb on - strand, within ABID97_RS00350 at 80.067 kb on - strand, within ABID97_RS00350 at 80.067 kb on - strand, within ABID97_RS00350 at 80.067 kb on - strand, within ABID97_RS00350 at 80.067 kb on - strand, within ABID97_RS00350 at 80.658 kb on + strand, within ABID97_RS00355 at 80.750 kb on + strand, within ABID97_RS00355 at 80.750 kb on + strand, within ABID97_RS00355 at 80.750 kb on + strand, within ABID97_RS00355 at 80.751 kb on - strand, within ABID97_RS00355 at 80.969 kb on + strand at 80.969 kb on + strand at 80.969 kb on + strand at 80.969 kb on + strand at 80.969 kb on + strand at 80.969 kb on + strand at 80.969 kb on + strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.970 kb on - strand at 80.974 kb on + strand at 80.975 kb on - strand at 80.975 kb on - strand at 80.975 kb on - strand at 80.999 kb on - strand at 80.999 kb on - strand at 80.999 kb on - strand at 81.468 kb on + strand, within ABID97_RS00360 at 81.468 kb on + strand, within ABID97_RS00360 at 81.523 kb on - strand, within ABID97_RS00360 at 81.523 kb on - strand, within ABID97_RS00360
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 79,334 + ABID97_RS00345 0.67 +1.4 79,334 + ABID97_RS00345 0.67 -0.3 79,335 - ABID97_RS00345 0.68 -0.2 79,436 + ABID97_RS00345 0.78 +1.1 79,436 + ABID97_RS00345 0.78 +0.4 79,436 + ABID97_RS00345 0.78 +0.0 79,436 + ABID97_RS00345 0.78 -0.1 79,437 - ABID97_RS00345 0.78 -1.6 79,437 - ABID97_RS00345 0.78 -0.1 79,437 - ABID97_RS00345 0.78 -0.2 79,437 - ABID97_RS00345 0.78 -0.5 79,598 + -0.4 79,598 + -0.3 79,598 + -1.1 79,598 + -3.6 79,787 + ABID97_RS00350 0.23 -0.5 79,787 + ABID97_RS00350 0.23 +1.4 79,787 + ABID97_RS00350 0.23 -0.8 79,787 + ABID97_RS00350 0.23 -0.2 79,788 - ABID97_RS00350 0.23 -0.4 80,066 + ABID97_RS00350 0.84 +0.4 80,066 + ABID97_RS00350 0.84 -0.4 80,066 + ABID97_RS00350 0.84 +0.1 80,066 + ABID97_RS00350 0.84 -0.5 80,066 + ABID97_RS00350 0.84 -0.3 80,066 + ABID97_RS00350 0.84 -0.2 80,067 - ABID97_RS00350 0.85 +0.4 80,067 - ABID97_RS00350 0.85 -0.6 80,067 - ABID97_RS00350 0.85 -0.1 80,067 - ABID97_RS00350 0.85 +0.3 80,067 - ABID97_RS00350 0.85 -1.5 80,067 - ABID97_RS00350 0.85 -0.6 80,658 + ABID97_RS00355 0.61 -0.4 80,750 + ABID97_RS00355 0.73 -0.7 80,750 + ABID97_RS00355 0.73 -0.4 80,750 + ABID97_RS00355 0.73 +0.0 80,751 - ABID97_RS00355 0.73 +0.0 80,969 + -0.1 80,969 + +1.6 80,969 + -0.1 80,969 + -0.4 80,969 + -1.0 80,969 + -0.7 80,969 + +0.2 80,970 - -0.2 80,970 - +0.6 80,970 - +0.4 80,970 - -2.5 80,970 - +0.4 80,970 - -0.6 80,970 - +0.2 80,970 - +0.4 80,970 - -0.3 80,970 - +0.4 80,974 + +0.7 80,975 - +0.3 80,975 - -1.0 80,975 - +1.6 80,999 - +0.4 80,999 - -0.0 80,999 - -1.8 81,468 + ABID97_RS00360 0.77 -1.1 81,468 + ABID97_RS00360 0.77 -0.4 81,523 - ABID97_RS00360 0.86 -0.1 81,523 - ABID97_RS00360 0.86 -0.8
Or see this region's nucleotide sequence