Strain Fitness in Escherichia coli BW25113 around b3929

Experiment: D-Gluconic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Gluconic Acid (C)
4,115,886	+	glpF	b3927	0.73	+0.9
4,115,889	+	glpF	b3927	0.73	-0.3
4,115,893	-	glpF	b3927	0.74	+1.5
4,115,953	+	glpF	b3927	0.81	-0.4
4,115,956	+	glpF	b3927	0.81	+0.0
4,115,956	+	glpF	b3927	0.81	-0.3
4,115,960	+	glpF	b3927	0.82	-0.0
4,115,960	+	glpF	b3927	0.82	+0.2
4,115,964	-	glpF	b3927	0.82	+1.1
4,115,966	+	glpF	b3927	0.83	-0.8
4,115,968	-	glpF	b3927	0.83	-0.4
4,116,014	+	glpF	b3927	0.88	-0.8
4,116,023	+	glpF	b3927	0.89	-0.6
4,116,023	+	glpF	b3927	0.89	+0.3
4,116,027	+	glpF	b3927	0.90	-0.7
4,116,036	-				-0.6
4,116,056	+				-0.5
4,116,081	+				-0.8
4,116,101	+				-0.3
4,116,101	+				-2.1
4,116,103	+				-1.0
4,116,138	-				-0.5
4,116,148	+				-0.3
4,116,171	+				-1.1
4,116,174	+				+0.2
4,116,175	+				-1.0
4,116,176	+				-0.4
4,116,193	-				+0.0
4,116,236	+				-0.5
4,116,236	+				-1.1
4,116,236	-				-0.2
4,116,236	-				+0.5
4,116,241	-				+0.5
4,116,241	-				+0.0
4,116,289	+				-0.2
4,116,289	+				+0.1
4,116,292	+				+0.3
4,116,293	-				+0.9
4,116,355	-				+0.1
4,116,360	-				-0.6
4,116,381	+				+0.2
4,116,398	+				+0.7
4,116,415	+				+0.8
4,116,415	+				+0.7
4,116,415	+				+0.5
4,116,418	-				+0.5
4,116,420	+				+0.1
4,116,459	-				+0.5
4,116,528	-				-0.0
4,116,533	-				+0.2
4,116,534	+				+0.0
4,116,535	+				+0.5
4,116,542	-				+0.3
4,116,543	-				+0.3
4,116,543	-				+0.1
4,116,548	+				+0.9
4,116,548	+				+0.5
4,116,548	+				+0.3
4,116,564	-	yiiU	b3928	0.11	+0.2
4,116,580	+	yiiU	b3928	0.17	+0.9
4,116,592	+	yiiU	b3928	0.22	+0.7
4,116,597	+	yiiU	b3928	0.24	-0.1
4,116,599	+	yiiU	b3928	0.25	-0.2
4,116,599	+	yiiU	b3928	0.25	-0.4
4,116,603	-	yiiU	b3928	0.26	-0.8
4,116,607	+	yiiU	b3928	0.28	+0.6
4,116,647	+	yiiU	b3928	0.44	+1.1
4,116,647	+	yiiU	b3928	0.44	+0.3
4,116,654	+	yiiU	b3928	0.47	+1.2
4,116,683	+	yiiU	b3928	0.59	+0.4
4,116,686	-	yiiU	b3928	0.60	+1.1
4,116,686	-	yiiU	b3928	0.60	+0.1
4,116,691	+	yiiU	b3928	0.62	+0.2
4,116,691	+	yiiU	b3928	0.62	-0.6
4,116,748	+	yiiU	b3928	0.85	+0.5
4,116,767	+				+0.7
4,116,767	+				+0.4
4,116,767	+				+0.7
4,116,775	-				+0.2
4,116,782	+				-0.3
4,116,782	+				+0.9
4,116,785	-				+0.8
4,116,789	-				+0.3
4,116,789	-				-1.0
4,116,816	+				-0.5
4,116,816	+				+1.2
4,116,816	+				+0.2
4,116,824	-				+0.3
4,116,824	-				-0.1
4,116,824	-				-1.6
4,116,824	-				-0.4
4,116,824	-				-0.4
4,116,858	+				+0.8
4,116,883	-				+1.1
4,116,883	-				+0.9
4,116,930	+	rraA	b3929	0.13	+1.0
4,116,930	+	rraA	b3929	0.13	+0.3
4,116,932	-	rraA	b3929	0.13	+0.1
4,116,932	-	rraA	b3929	0.13	+0.9
4,116,940	+	rraA	b3929	0.15	+0.5
4,116,960	-	rraA	b3929	0.19	+0.7
4,117,029	-	rraA	b3929	0.33	+0.6
4,117,029	-	rraA	b3929	0.33	+1.3
4,117,039	-	rraA	b3929	0.35	+1.2
4,117,050	-	rraA	b3929	0.37	+0.8
4,117,083	-	rraA	b3929	0.44	+0.7
4,117,083	-	rraA	b3929	0.44	+0.3
4,117,125	-	rraA	b3929	0.53	+0.6
4,117,125	-	rraA	b3929	0.53	+0.8
4,117,130	-	rraA	b3929	0.54	+0.9
4,117,130	-	rraA	b3929	0.54	+1.1
4,117,130	-	rraA	b3929	0.54	+1.3
4,117,130	-	rraA	b3929	0.54	-0.1
4,117,140	-	rraA	b3929	0.56	+0.4
4,117,140	-	rraA	b3929	0.56	+0.8
4,117,180	+	rraA	b3929	0.64	+0.8
4,117,218	-	rraA	b3929	0.72	+1.3
4,117,218	-	rraA	b3929	0.72	+0.2
4,117,227	-	rraA	b3929	0.74	+0.1
4,117,227	-	rraA	b3929	0.74	+1.0
4,117,241	-	rraA	b3929	0.77	-0.2
4,117,243	+	rraA	b3929	0.77	+0.8
4,117,313	+				+3.7
4,117,313	+				+0.9
4,117,313	+				+1.8
4,117,313	+				-1.2
4,117,313	+				+0.1
4,117,330	-				+0.9
4,117,369	-				-1.6
4,117,399	+				+0.4
4,117,399	-				+1.1
4,117,399	-				-0.3
4,117,514	-				+0.1
4,117,516	+				+0.1
4,117,516	+				-0.0
4,117,538	+				+1.0
4,117,538	+				+0.3
4,117,547	+	menA	b3930	0.11	-0.0
4,117,547	+	menA	b3930	0.11	+0.1
4,117,575	-	menA	b3930	0.14	-0.9
4,117,575	-	menA	b3930	0.14	-0.2
4,117,616	+	menA	b3930	0.18	+0.4
4,117,622	-	menA	b3930	0.19	-0.3
4,117,624	-	menA	b3930	0.19	+0.5
4,117,634	-	menA	b3930	0.20	+0.1
4,117,634	-	menA	b3930	0.20	-1.2
4,117,647	-	menA	b3930	0.22	-1.7
4,117,647	-	menA	b3930	0.22	-1.5
4,117,654	+	menA	b3930	0.22	+0.2
4,117,668	-	menA	b3930	0.24	-0.6
4,117,701	-	menA	b3930	0.28	-1.0
4,117,701	-	menA	b3930	0.28	-0.6
4,117,773	+	menA	b3930	0.35	-0.1
4,117,777	-	menA	b3930	0.36	-0.1
4,117,792	-	menA	b3930	0.37	+0.1
4,117,792	-	menA	b3930	0.37	+1.1
4,117,794	+	menA	b3930	0.38	+0.2
4,117,829	+	menA	b3930	0.41	+0.0
4,117,829	+	menA	b3930	0.41	-0.6
4,117,837	-	menA	b3930	0.42	-0.4
4,117,837	-	menA	b3930	0.42	-0.7
4,117,837	-	menA	b3930	0.42	-0.4
4,117,837	-	menA	b3930	0.42	-1.4
4,117,841	+	menA	b3930	0.43	-0.0
4,117,841	+	menA	b3930	0.43	-0.3
4,117,853	+	menA	b3930	0.44	+1.4
4,117,856	-	menA	b3930	0.44	+0.5
4,117,861	-	menA	b3930	0.45	+1.1
4,117,866	+	menA	b3930	0.45	-0.2
4,117,873	+	menA	b3930	0.46	+0.2
4,117,901	+	menA	b3930	0.49	+0.6
4,117,909	-	menA	b3930	0.50	+0.2
4,117,920	+	menA	b3930	0.51	-0.1
4,117,928	-	menA	b3930	0.52	-0.9
4,117,928	-	menA	b3930	0.52	+0.2
4,117,928	-	menA	b3930	0.52	+0.1
4,117,929	-	menA	b3930	0.52	-0.3
4,117,935	-	menA	b3930	0.53	+0.3
4,117,948	+	menA	b3930	0.54	-0.9
4,117,948	+	menA	b3930	0.54	+0.1
4,117,948	+	menA	b3930	0.54	-0.2
4,117,953	+	menA	b3930	0.55	+1.4
4,117,956	-	menA	b3930	0.55	-0.6
4,117,956	-	menA	b3930	0.55	+0.0
4,118,020	-	menA	b3930	0.62	-0.1
4,118,020	-	menA	b3930	0.62	+0.6
4,118,020	-	menA	b3930	0.62	+0.4
4,118,020	-	menA	b3930	0.62	+0.5
4,118,034	-	menA	b3930	0.63	+0.3
4,118,044	-	menA	b3930	0.65	-0.6
4,118,044	-	menA	b3930	0.65	-0.5
4,118,049	-	menA	b3930	0.65	-0.1
4,118,049	-	menA	b3930	0.65	+0.7
4,118,055	+	menA	b3930	0.66	+0.1
4,118,055	+	menA	b3930	0.66	+0.8
4,118,063	-	menA	b3930	0.67	-0.8
4,118,063	-	menA	b3930	0.67	-0.5
4,118,068	+	menA	b3930	0.67	-0.1
4,118,068	+	menA	b3930	0.67	-0.3
4,118,091	-	menA	b3930	0.70	-0.3
4,118,109	-	menA	b3930	0.72	-0.0
4,118,130	-	menA	b3930	0.74	-1.3
4,118,130	-	menA	b3930	0.74	+0.9
4,118,132	+	menA	b3930	0.74	+0.1
4,118,146	+	menA	b3930	0.76	+0.3
4,118,190	+	menA	b3930	0.80	+0.0
4,118,190	+	menA	b3930	0.80	-0.3
4,118,190	-	menA	b3930	0.80	-0.0
4,118,190	-	menA	b3930	0.80	-0.6
4,118,197	-	menA	b3930	0.81	-0.9
4,118,197	-	menA	b3930	0.81	+1.7
4,118,202	+	menA	b3930	0.82	-0.0
4,118,204	+	menA	b3930	0.82	+0.6
4,118,208	-	menA	b3930	0.82	+0.7
4,118,212	-	menA	b3930	0.83	-0.5
4,118,223	-	menA	b3930	0.84	+0.1
4,118,263	+	menA	b3930	0.88	-0.4
4,118,265	-	menA	b3930	0.88	-0.9
4,118,268	+	menA	b3930	0.89	+0.0
4,118,268	+	menA	b3930	0.89	+0.2
4,118,269	-	menA	b3930	0.89	+0.1
4,118,269	-	menA	b3930	0.89	-0.4
4,118,271	-	menA	b3930	0.89	-0.9
4,118,292	-				+0.0
4,118,329	+				-0.2