Strain Fitness in Escherichia coli BW25113 around b2029

Experiment: D-Gluconic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Gluconic Acid (C)
2,096,909	+	ugd	b2028	0.38	+0.8
2,096,909	+	ugd	b2028	0.38	+0.6
2,096,917	-	ugd	b2028	0.38	+0.2
2,096,917	-	ugd	b2028	0.38	+0.7
2,096,918	-	ugd	b2028	0.38	-1.0
2,096,918	-	ugd	b2028	0.38	-0.5
2,096,922	+	ugd	b2028	0.39	-0.8
2,096,922	+	ugd	b2028	0.39	-0.1
2,096,998	-	ugd	b2028	0.45	+0.1
2,097,030	-	ugd	b2028	0.48	-0.2
2,097,035	-	ugd	b2028	0.48	-0.2
2,097,058	-	ugd	b2028	0.50	-0.1
2,097,074	+	ugd	b2028	0.52	-0.5
2,097,111	+	ugd	b2028	0.55	-1.2
2,097,111	+	ugd	b2028	0.55	-0.5
2,097,111	+	ugd	b2028	0.55	+0.4
2,097,113	+	ugd	b2028	0.55	+0.3
2,097,119	-	ugd	b2028	0.56	-0.3
2,097,121	+	ugd	b2028	0.56	+0.5
2,097,121	-	ugd	b2028	0.56	-0.3
2,097,129	-	ugd	b2028	0.56	-0.2
2,097,141	+	ugd	b2028	0.57	+0.1
2,097,166	-	ugd	b2028	0.60	+0.1
2,097,166	-	ugd	b2028	0.60	-0.4
2,097,195	+	ugd	b2028	0.62	+0.6
2,097,195	+	ugd	b2028	0.62	+0.0
2,097,271	+	ugd	b2028	0.69	+0.0
2,097,278	+	ugd	b2028	0.69	-0.6
2,097,297	+	ugd	b2028	0.71	-0.0
2,097,332	+	ugd	b2028	0.74	-0.2
2,097,332	+	ugd	b2028	0.74	+0.9
2,097,343	+	ugd	b2028	0.75	-1.0
2,097,343	+	ugd	b2028	0.75	-0.4
2,097,394	+	ugd	b2028	0.79	-1.6
2,097,394	+	ugd	b2028	0.79	+1.0
2,097,402	-	ugd	b2028	0.80	-1.1
2,097,403	+	ugd	b2028	0.80	+1.7
2,097,417	+	ugd	b2028	0.81	+0.5
2,097,422	+	ugd	b2028	0.81	-0.9
2,097,429	+	ugd	b2028	0.82	+0.1
2,097,450	+	ugd	b2028	0.84	+0.1
2,097,455	+	ugd	b2028	0.84	+0.1
2,097,534	-				-1.2
2,097,574	-				-0.9
2,097,583	+				-0.3
2,097,602	+				+1.2
2,097,606	+				+0.6
2,097,606	+				-0.3
2,097,615	+				+0.2
2,097,615	+				+0.1
2,097,623	-				-0.6
2,097,661	+				-0.8
2,097,661	+				-1.5
2,097,685	+				-0.9
2,097,687	+				+0.4
2,097,715	+				-1.0
2,097,718	+				-0.2
2,097,718	+				-0.1
2,097,718	+				+0.1
2,097,718	-				-0.3
2,097,718	-				-0.1
2,097,718	-				-0.1
2,097,723	-				-0.8
2,097,849	-				+0.1
2,097,849	-				-0.4
2,097,851	-				-1.1
2,097,854	-				+0.6
2,097,905	-				-0.6
2,097,905	-				+0.3
2,097,910	-				-0.6
2,097,910	-				+0.6
2,097,914	-				-0.8
2,097,915	-				-1.1
2,097,934	-				-2.1
2,097,938	-				-2.2
2,097,938	-				-1.7
2,097,967	-				-0.7
2,097,971	-				-0.5
2,097,971	-				-2.6
2,097,971	-				-0.4
2,097,971	-				-0.5
2,097,973	-				+0.4
2,097,977	-				-0.2
2,097,977	-				-1.0
2,097,978	-				-0.5
2,098,008	-				-2.0
2,098,008	-				-0.6
2,098,017	-				-1.0
2,098,020	-				-1.0
2,098,049	-	gnd	b2029	0.12	-2.8
2,098,052	-	gnd	b2029	0.12	-0.2
2,098,052	-	gnd	b2029	0.12	-1.1
2,098,056	+	gnd	b2029	0.12	-0.8
2,098,059	+	gnd	b2029	0.12	-0.8
2,098,059	+	gnd	b2029	0.12	-1.9
2,098,059	-	gnd	b2029	0.12	+0.4
2,098,073	-	gnd	b2029	0.13	-1.2
2,098,073	-	gnd	b2029	0.13	-0.5
2,098,083	+	gnd	b2029	0.14	-1.1
2,098,091	-	gnd	b2029	0.15	-0.8
2,098,091	-	gnd	b2029	0.15	-1.5
2,098,196	-	gnd	b2029	0.22	-1.5
2,098,245	-	gnd	b2029	0.26	-1.2
2,098,245	-	gnd	b2029	0.26	-0.8
2,098,245	-	gnd	b2029	0.26	-1.2
2,098,275	+	gnd	b2029	0.28	-0.2
2,098,283	-	gnd	b2029	0.28	-0.9
2,098,397	-	gnd	b2029	0.36	-1.3
2,098,432	-	gnd	b2029	0.39	-0.6
2,098,439	+	gnd	b2029	0.39	-1.3
2,098,622	-	gnd	b2029	0.52	+0.2
2,098,627	-	gnd	b2029	0.53	+0.2
2,098,627	-	gnd	b2029	0.53	-0.8
2,098,674	-	gnd	b2029	0.56	+0.0
2,098,688	+	gnd	b2029	0.57	-3.1
2,098,688	+	gnd	b2029	0.57	+0.4
2,098,744	+	gnd	b2029	0.61	-0.1
2,098,753	-	gnd	b2029	0.62	-2.6
2,098,779	+	gnd	b2029	0.63	-3.0
2,098,782	-	gnd	b2029	0.64	-2.0
2,098,809	-	gnd	b2029	0.66	-2.3
2,098,809	-	gnd	b2029	0.66	+0.1
2,098,872	+	gnd	b2029	0.70	-2.3
2,099,010	+	gnd	b2029	0.80	-0.7
2,099,134	-	gnd	b2029	0.89	-1.6
2,099,242	+				-2.8
2,099,248	+				-2.2
2,099,261	-				-0.8
2,099,264	-				-1.8
2,099,264	-				-1.2
2,099,264	-				-1.6
2,099,303	+				-1.7
2,099,307	-				-0.4
2,099,307	-				-0.0
2,099,308	+				-1.2
2,099,311	-				-0.5
2,099,336	+				-1.3
2,099,336	+				-0.3
2,099,387	+				-0.6
2,099,387	+				+0.6
2,099,398	-				-0.2
2,099,561	-	wbbL	b4571	0.40	+0.4
2,099,665	+	wbbL	b4571	0.70	-0.9
2,099,674	-	wbbL	b4571	0.73	+0.2
2,099,710	-	wbbL	b4571	0.83	-0.7
2,099,720	+	wbbL	b4571	0.86	-0.1
2,099,784	-				-0.9
2,099,812	-				-0.4
2,099,812	-				-0.2