Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS14050 and RPSI07_RS14055 are separated by 111 nucleotides RPSI07_RS14055 and RPSI07_RS14060 are separated by 133 nucleotides RPSI07_RS14060 and RPSI07_RS14065 overlap by 4 nucleotides
RPSI07_RS14050: RPSI07_RS14050 - NADP-dependent malic enzyme, at 1,341,507 to 1,343,834
_RS14050
RPSI07_RS14055: RPSI07_RS14055 - porin, at 1,343,946 to 1,345,013
_RS14055
RPSI07_RS14060: RPSI07_RS14060 - OHCU decarboxylase, at 1,345,147 to 1,345,668
_RS14060
RPSI07_RS14065: RPSI07_RS14065 - allantoinase PuuE, at 1,345,665 to 1,346,627
_RS14065
Position (kb) 1343
1344
1345
1346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1343.079 kb on + strand, within RPSI07_RS14050 at 1343.079 kb on + strand, within RPSI07_RS14050 at 1343.080 kb on - strand, within RPSI07_RS14050 at 1343.505 kb on + strand, within RPSI07_RS14050 at 1343.505 kb on + strand, within RPSI07_RS14050 at 1343.506 kb on - strand, within RPSI07_RS14050 at 1343.948 kb on - strand at 1344.026 kb on - strand at 1344.053 kb on - strand, within RPSI07_RS14055 at 1345.311 kb on - strand, within RPSI07_RS14060 at 1345.589 kb on + strand, within RPSI07_RS14060 at 1345.589 kb on + strand, within RPSI07_RS14060 at 1345.589 kb on + strand, within RPSI07_RS14060 at 1345.589 kb on + strand, within RPSI07_RS14060 at 1345.589 kb on + strand, within RPSI07_RS14060 at 1345.589 kb on + strand, within RPSI07_RS14060 at 1345.589 kb on + strand, within RPSI07_RS14060 at 1345.590 kb on - strand, within RPSI07_RS14060 at 1345.590 kb on - strand, within RPSI07_RS14060 at 1345.590 kb on - strand, within RPSI07_RS14060 at 1345.590 kb on - strand, within RPSI07_RS14060 at 1345.590 kb on - strand, within RPSI07_RS14060 at 1345.590 kb on - strand, within RPSI07_RS14060 at 1345.590 kb on - strand, within RPSI07_RS14060 at 1345.699 kb on + strand at 1345.700 kb on - strand at 1345.753 kb on - strand at 1345.753 kb on - strand at 1345.753 kb on - strand at 1345.775 kb on - strand, within RPSI07_RS14065 at 1345.775 kb on - strand, within RPSI07_RS14065 at 1345.889 kb on - strand, within RPSI07_RS14065 at 1345.921 kb on + strand, within RPSI07_RS14065 at 1345.921 kb on + strand, within RPSI07_RS14065 at 1345.922 kb on - strand, within RPSI07_RS14065 at 1345.987 kb on + strand, within RPSI07_RS14065 at 1345.987 kb on + strand, within RPSI07_RS14065 at 1345.988 kb on - strand, within RPSI07_RS14065 at 1345.988 kb on - strand, within RPSI07_RS14065 at 1345.988 kb on - strand, within RPSI07_RS14065
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 1,343,079 + RPSI07_RS14050 0.68 -0.9 1,343,079 + RPSI07_RS14050 0.68 -1.4 1,343,080 - RPSI07_RS14050 0.68 -0.3 1,343,505 + RPSI07_RS14050 0.86 +0.6 1,343,505 + RPSI07_RS14050 0.86 -0.9 1,343,506 - RPSI07_RS14050 0.86 -0.9 1,343,948 - -2.9 1,344,026 - -0.2 1,344,053 - RPSI07_RS14055 0.10 -0.6 1,345,311 - RPSI07_RS14060 0.31 -0.5 1,345,589 + RPSI07_RS14060 0.85 +0.7 1,345,589 + RPSI07_RS14060 0.85 +0.6 1,345,589 + RPSI07_RS14060 0.85 -0.0 1,345,589 + RPSI07_RS14060 0.85 +1.8 1,345,589 + RPSI07_RS14060 0.85 +1.3 1,345,589 + RPSI07_RS14060 0.85 +1.2 1,345,589 + RPSI07_RS14060 0.85 -0.3 1,345,590 - RPSI07_RS14060 0.85 +1.2 1,345,590 - RPSI07_RS14060 0.85 -0.4 1,345,590 - RPSI07_RS14060 0.85 +0.4 1,345,590 - RPSI07_RS14060 0.85 +2.3 1,345,590 - RPSI07_RS14060 0.85 -1.2 1,345,590 - RPSI07_RS14060 0.85 -1.2 1,345,590 - RPSI07_RS14060 0.85 -0.5 1,345,699 + -1.1 1,345,700 - -0.2 1,345,753 - -0.8 1,345,753 - -0.4 1,345,753 - -0.4 1,345,775 - RPSI07_RS14065 0.11 -0.0 1,345,775 - RPSI07_RS14065 0.11 -1.5 1,345,889 - RPSI07_RS14065 0.23 -1.3 1,345,921 + RPSI07_RS14065 0.27 -0.5 1,345,921 + RPSI07_RS14065 0.27 -0.2 1,345,922 - RPSI07_RS14065 0.27 -0.5 1,345,987 + RPSI07_RS14065 0.33 +0.1 1,345,987 + RPSI07_RS14065 0.33 -0.2 1,345,988 - RPSI07_RS14065 0.34 +0.0 1,345,988 - RPSI07_RS14065 0.34 -0.4 1,345,988 - RPSI07_RS14065 0.34 -1.6
Or see this region's nucleotide sequence