Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS01720 and RPSI07_RS24210 are separated by 109 nucleotides RPSI07_RS24210 and RPSI07_RS01725 are separated by 44 nucleotides RPSI07_RS01725 and RPSI07_RS01730 overlap by 4 nucleotides RPSI07_RS01730 and RPSI07_RS01735 overlap by 4 nucleotides
RPSI07_RS01720: RPSI07_RS01720 - LysR family transcriptional regulator, at 449,760 to 450,731
_RS01720
RPSI07_RS24210: RPSI07_RS24210 - hypothetical protein, at 450,841 to 451,029
_RS24210
RPSI07_RS01725: RPSI07_RS01725 - NAD(P)-dependent alcohol dehydrogenase, at 451,074 to 451,928
_RS01725
RPSI07_RS01730: RPSI07_RS01730 - cupin domain-containing protein, at 451,925 to 452,467
_RS01730
RPSI07_RS01735: RPSI07_RS01735 - AcrB/AcrD/AcrF family protein, at 452,464 to 455,667
_RS01735
Position (kb) 451
452 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 450.215 kb on - strand, within RPSI07_RS01720 at 450.765 kb on + strand at 450.766 kb on - strand at 450.766 kb on - strand at 450.809 kb on + strand at 450.816 kb on + strand at 450.816 kb on + strand at 450.828 kb on + strand at 450.828 kb on + strand at 450.828 kb on + strand at 450.829 kb on - strand at 451.080 kb on + strand at 451.080 kb on + strand at 451.080 kb on + strand at 451.080 kb on + strand at 451.095 kb on + strand at 451.095 kb on + strand at 451.096 kb on - strand at 451.096 kb on - strand at 451.186 kb on - strand, within RPSI07_RS01725 at 451.235 kb on + strand, within RPSI07_RS01725 at 451.245 kb on + strand, within RPSI07_RS01725 at 451.245 kb on + strand, within RPSI07_RS01725 at 451.246 kb on - strand, within RPSI07_RS01725 at 451.246 kb on - strand, within RPSI07_RS01725 at 451.416 kb on + strand, within RPSI07_RS01725 at 451.416 kb on + strand, within RPSI07_RS01725 at 451.416 kb on + strand, within RPSI07_RS01725 at 451.416 kb on + strand, within RPSI07_RS01725 at 451.416 kb on + strand, within RPSI07_RS01725 at 451.417 kb on - strand, within RPSI07_RS01725 at 451.417 kb on - strand, within RPSI07_RS01725 at 451.417 kb on - strand, within RPSI07_RS01725 at 451.417 kb on - strand, within RPSI07_RS01725 at 451.417 kb on - strand, within RPSI07_RS01725 at 451.417 kb on - strand, within RPSI07_RS01725 at 451.422 kb on + strand, within RPSI07_RS01725 at 451.422 kb on + strand, within RPSI07_RS01725 at 451.422 kb on + strand, within RPSI07_RS01725 at 451.423 kb on - strand, within RPSI07_RS01725 at 451.423 kb on - strand, within RPSI07_RS01725 at 451.423 kb on - strand, within RPSI07_RS01725 at 451.423 kb on - strand, within RPSI07_RS01725 at 451.458 kb on + strand, within RPSI07_RS01725 at 451.458 kb on + strand, within RPSI07_RS01725 at 451.458 kb on + strand, within RPSI07_RS01725 at 451.458 kb on + strand, within RPSI07_RS01725 at 451.458 kb on + strand, within RPSI07_RS01725 at 451.459 kb on - strand, within RPSI07_RS01725 at 451.459 kb on - strand, within RPSI07_RS01725 at 451.459 kb on - strand, within RPSI07_RS01725 at 451.459 kb on - strand, within RPSI07_RS01725 at 451.459 kb on - strand, within RPSI07_RS01725 at 451.460 kb on - strand, within RPSI07_RS01725 at 451.468 kb on - strand, within RPSI07_RS01725 at 451.468 kb on - strand, within RPSI07_RS01725 at 451.568 kb on + strand, within RPSI07_RS01725 at 451.569 kb on + strand, within RPSI07_RS01725 at 451.570 kb on - strand, within RPSI07_RS01725 at 451.570 kb on - strand, within RPSI07_RS01725 at 451.570 kb on - strand, within RPSI07_RS01725 at 451.570 kb on - strand, within RPSI07_RS01725 at 451.570 kb on - strand, within RPSI07_RS01725 at 451.657 kb on + strand, within RPSI07_RS01725 at 451.658 kb on - strand, within RPSI07_RS01725 at 451.742 kb on + strand, within RPSI07_RS01725 at 451.742 kb on + strand, within RPSI07_RS01725 at 451.912 kb on + strand at 451.912 kb on + strand at 451.912 kb on + strand at 451.913 kb on - strand at 452.081 kb on + strand, within RPSI07_RS01730 at 452.081 kb on + strand, within RPSI07_RS01730 at 452.081 kb on + strand, within RPSI07_RS01730 at 452.082 kb on - strand, within RPSI07_RS01730 at 452.082 kb on - strand, within RPSI07_RS01730 at 452.082 kb on - strand, within RPSI07_RS01730 at 452.082 kb on - strand, within RPSI07_RS01730 at 452.500 kb on + strand at 452.501 kb on - strand at 452.532 kb on + strand at 452.617 kb on + strand at 452.617 kb on + strand at 452.722 kb on + strand at 452.723 kb on - strand at 452.723 kb on - strand at 452.860 kb on + strand, within RPSI07_RS01735 at 452.860 kb on + strand, within RPSI07_RS01735 at 452.860 kb on + strand, within RPSI07_RS01735 at 452.860 kb on + strand, within RPSI07_RS01735 at 452.860 kb on + strand, within RPSI07_RS01735 at 452.860 kb on + strand, within RPSI07_RS01735
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 450,215 - RPSI07_RS01720 0.47 +0.4 450,765 + -0.1 450,766 - -0.7 450,766 - -0.7 450,809 + -0.1 450,816 + +0.3 450,816 + +0.5 450,828 + -0.1 450,828 + +1.1 450,828 + +0.7 450,829 - -0.5 451,080 + -0.3 451,080 + -0.4 451,080 + +0.6 451,080 + -1.1 451,095 + +0.7 451,095 + +2.6 451,096 - -1.7 451,096 - +0.2 451,186 - RPSI07_RS01725 0.13 -0.3 451,235 + RPSI07_RS01725 0.19 -0.8 451,245 + RPSI07_RS01725 0.20 -0.9 451,245 + RPSI07_RS01725 0.20 -0.9 451,246 - RPSI07_RS01725 0.20 -0.6 451,246 - RPSI07_RS01725 0.20 -1.9 451,416 + RPSI07_RS01725 0.40 +0.6 451,416 + RPSI07_RS01725 0.40 -1.2 451,416 + RPSI07_RS01725 0.40 -1.3 451,416 + RPSI07_RS01725 0.40 +0.1 451,416 + RPSI07_RS01725 0.40 +0.3 451,417 - RPSI07_RS01725 0.40 -1.9 451,417 - RPSI07_RS01725 0.40 +0.2 451,417 - RPSI07_RS01725 0.40 -2.6 451,417 - RPSI07_RS01725 0.40 +0.5 451,417 - RPSI07_RS01725 0.40 -1.0 451,417 - RPSI07_RS01725 0.40 -0.4 451,422 + RPSI07_RS01725 0.41 -0.2 451,422 + RPSI07_RS01725 0.41 -1.1 451,422 + RPSI07_RS01725 0.41 -2.9 451,423 - RPSI07_RS01725 0.41 +1.9 451,423 - RPSI07_RS01725 0.41 -0.7 451,423 - RPSI07_RS01725 0.41 +1.3 451,423 - RPSI07_RS01725 0.41 +0.5 451,458 + RPSI07_RS01725 0.45 -0.2 451,458 + RPSI07_RS01725 0.45 -0.1 451,458 + RPSI07_RS01725 0.45 -1.5 451,458 + RPSI07_RS01725 0.45 -0.1 451,458 + RPSI07_RS01725 0.45 -2.3 451,459 - RPSI07_RS01725 0.45 -1.1 451,459 - RPSI07_RS01725 0.45 +0.7 451,459 - RPSI07_RS01725 0.45 +1.2 451,459 - RPSI07_RS01725 0.45 +0.0 451,459 - RPSI07_RS01725 0.45 -0.1 451,460 - RPSI07_RS01725 0.45 +0.0 451,468 - RPSI07_RS01725 0.46 -1.1 451,468 - RPSI07_RS01725 0.46 -1.6 451,568 + RPSI07_RS01725 0.58 +0.3 451,569 + RPSI07_RS01725 0.58 +0.0 451,570 - RPSI07_RS01725 0.58 -0.7 451,570 - RPSI07_RS01725 0.58 -0.9 451,570 - RPSI07_RS01725 0.58 -0.3 451,570 - RPSI07_RS01725 0.58 -0.2 451,570 - RPSI07_RS01725 0.58 +0.1 451,657 + RPSI07_RS01725 0.68 -0.4 451,658 - RPSI07_RS01725 0.68 +2.8 451,742 + RPSI07_RS01725 0.78 -0.7 451,742 + RPSI07_RS01725 0.78 +1.0 451,912 + -0.4 451,912 + +0.2 451,912 + -1.2 451,913 - +0.3 452,081 + RPSI07_RS01730 0.29 -2.0 452,081 + RPSI07_RS01730 0.29 -0.9 452,081 + RPSI07_RS01730 0.29 +0.6 452,082 - RPSI07_RS01730 0.29 -1.3 452,082 - RPSI07_RS01730 0.29 -1.0 452,082 - RPSI07_RS01730 0.29 +0.4 452,082 - RPSI07_RS01730 0.29 -0.8 452,500 + -0.6 452,501 - +0.4 452,532 + -0.6 452,617 + -1.2 452,617 + +1.3 452,722 + -0.5 452,723 - -0.6 452,723 - -0.6 452,860 + RPSI07_RS01735 0.12 +0.4 452,860 + RPSI07_RS01735 0.12 -0.2 452,860 + RPSI07_RS01735 0.12 +0.0 452,860 + RPSI07_RS01735 0.12 -0.9 452,860 + RPSI07_RS01735 0.12 -0.2 452,860 + RPSI07_RS01735 0.12 -1.3
Or see this region's nucleotide sequence