Strain Fitness in Pseudomonas sp. RS175 around PFR28_00103

Experiment: D-Mannose carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00102 and PFR28_00103 are separated by 37 nucleotidesPFR28_00103 and PFR28_00104 are separated by 18 nucleotides PFR28_00102: PFR28_00102 - hypothetical protein, at 114,359 to 116,389 _00102 PFR28_00103: PFR28_00103 - putative metal-dependent hydrolase YjjV, at 116,427 to 117,203 _00103 PFR28_00104: PFR28_00104 - Catabolite repressor/activator, at 117,222 to 118,217 _00104 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1at 116.387 kb on + strandat 116.388 kb on - strandat 116.428 kb on + strandat 116.429 kb on - strandat 116.429 kb on - strandat 116.520 kb on - strand, within PFR28_00103at 116.526 kb on + strand, within PFR28_00103at 116.526 kb on + strand, within PFR28_00103at 116.526 kb on + strand, within PFR28_00103at 116.527 kb on - strand, within PFR28_00103at 116.527 kb on - strand, within PFR28_00103at 116.527 kb on - strand, within PFR28_00103at 116.688 kb on + strand, within PFR28_00103at 116.688 kb on + strand, within PFR28_00103at 116.688 kb on + strand, within PFR28_00103at 116.688 kb on + strand, within PFR28_00103at 116.698 kb on + strand, within PFR28_00103at 116.698 kb on + strand, within PFR28_00103at 116.699 kb on - strand, within PFR28_00103at 116.699 kb on - strand, within PFR28_00103at 116.716 kb on + strand, within PFR28_00103at 116.716 kb on + strand, within PFR28_00103at 116.716 kb on + strand, within PFR28_00103at 116.716 kb on + strand, within PFR28_00103at 116.802 kb on + strand, within PFR28_00103at 116.802 kb on + strand, within PFR28_00103at 116.802 kb on + strand, within PFR28_00103at 116.802 kb on + strand, within PFR28_00103at 116.802 kb on + strand, within PFR28_00103at 116.802 kb on + strand, within PFR28_00103at 116.802 kb on + strand, within PFR28_00103at 116.803 kb on - strand, within PFR28_00103at 116.803 kb on - strand, within PFR28_00103at 116.803 kb on - strand, within PFR28_00103at 116.803 kb on - strand, within PFR28_00103at 116.803 kb on - strand, within PFR28_00103at 116.803 kb on - strand, within PFR28_00103at 116.896 kb on + strand, within PFR28_00103at 116.896 kb on + strand, within PFR28_00103at 116.897 kb on - strand, within PFR28_00103at 116.897 kb on - strand, within PFR28_00103at 116.897 kb on - strand, within PFR28_00103at 116.899 kb on + strand, within PFR28_00103at 116.899 kb on + strand, within PFR28_00103at 116.899 kb on + strand, within PFR28_00103at 116.900 kb on - strand, within PFR28_00103at 116.900 kb on - strand, within PFR28_00103at 116.900 kb on - strand, within PFR28_00103at 116.900 kb on - strand, within PFR28_00103at 117.004 kb on + strand, within PFR28_00103at 117.280 kb on + strandat 117.280 kb on + strandat 117.281 kb on - strandat 117.281 kb on - strandat 117.281 kb on - strandat 117.404 kb on + strand, within PFR28_00104at 117.475 kb on + strand, within PFR28_00104at 117.475 kb on + strand, within PFR28_00104at 117.475 kb on + strand, within PFR28_00104at 117.475 kb on + strand, within PFR28_00104at 117.475 kb on + strand, within PFR28_00104at 117.475 kb on + strand, within PFR28_00104at 117.476 kb on - strand, within PFR28_00104at 117.476 kb on - strand, within PFR28_00104at 117.476 kb on - strand, within PFR28_00104at 117.476 kb on - strand, within PFR28_00104at 117.476 kb on - strand, within PFR28_00104at 117.476 kb on - strand, within PFR28_00104at 117.476 kb on - strand, within PFR28_00104at 117.476 kb on - strand, within PFR28_00104at 117.582 kb on + strand, within PFR28_00104at 117.817 kb on + strand, within PFR28_00104at 117.943 kb on + strand, within PFR28_00104at 117.943 kb on + strand, within PFR28_00104at 117.991 kb on + strand, within PFR28_00104at 117.992 kb on - strand, within PFR28_00104at 117.992 kb on - strand, within PFR28_00104at 118.162 kb on + strandat 118.162 kb on + strandat 118.162 kb on + strandat 118.162 kb on + strandat 118.162 kb on + strandat 118.162 kb on + strandat 118.162 kb on + strandat 118.163 kb on - strandat 118.163 kb on - strandat 118.163 kb on - strandat 118.163 kb on - strandat 118.163 kb on - strandat 118.163 kb on - strandat 118.163 kb on - strandat 118.163 kb on - strandat 118.163 kb on - strandat 118.163 kb on - strandat 118.202 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose carbon 10 mM
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116,387 + -1.2
116,388 - -0.4
116,428 + -0.4
116,429 - -0.8
116,429 - +0.2
116,520 - PFR28_00103 0.12 +1.2
116,526 + PFR28_00103 0.13 +0.3
116,526 + PFR28_00103 0.13 +0.7
116,526 + PFR28_00103 0.13 -0.8
116,527 - PFR28_00103 0.13 +0.4
116,527 - PFR28_00103 0.13 -0.3
116,527 - PFR28_00103 0.13 +0.3
116,688 + PFR28_00103 0.34 -0.1
116,688 + PFR28_00103 0.34 -0.6
116,688 + PFR28_00103 0.34 -1.2
116,688 + PFR28_00103 0.34 -0.2
116,698 + PFR28_00103 0.35 -2.0
116,698 + PFR28_00103 0.35 +0.1
116,699 - PFR28_00103 0.35 -0.8
116,699 - PFR28_00103 0.35 -0.0
116,716 + PFR28_00103 0.37 -1.0
116,716 + PFR28_00103 0.37 -0.5
116,716 + PFR28_00103 0.37 +0.3
116,716 + PFR28_00103 0.37 +0.2
116,802 + PFR28_00103 0.48 +0.4
116,802 + PFR28_00103 0.48 +0.0
116,802 + PFR28_00103 0.48 +0.1
116,802 + PFR28_00103 0.48 +0.3
116,802 + PFR28_00103 0.48 -0.7
116,802 + PFR28_00103 0.48 +0.7
116,802 + PFR28_00103 0.48 +1.0
116,803 - PFR28_00103 0.48 -0.7
116,803 - PFR28_00103 0.48 +0.6
116,803 - PFR28_00103 0.48 +0.9
116,803 - PFR28_00103 0.48 -1.0
116,803 - PFR28_00103 0.48 +0.0
116,803 - PFR28_00103 0.48 -0.1
116,896 + PFR28_00103 0.60 +0.2
116,896 + PFR28_00103 0.60 -0.7
116,897 - PFR28_00103 0.60 -0.4
116,897 - PFR28_00103 0.60 -0.1
116,897 - PFR28_00103 0.60 +0.8
116,899 + PFR28_00103 0.61 -0.7
116,899 + PFR28_00103 0.61 +0.6
116,899 + PFR28_00103 0.61 +0.1
116,900 - PFR28_00103 0.61 +0.3
116,900 - PFR28_00103 0.61 +0.1
116,900 - PFR28_00103 0.61 -0.9
116,900 - PFR28_00103 0.61 +1.0
117,004 + PFR28_00103 0.74 -0.4
117,280 + -0.3
117,280 + +1.4
117,281 - +0.4
117,281 - +0.1
117,281 - +1.7
117,404 + PFR28_00104 0.18 -0.6
117,475 + PFR28_00104 0.25 -0.2
117,475 + PFR28_00104 0.25 -0.8
117,475 + PFR28_00104 0.25 +0.2
117,475 + PFR28_00104 0.25 -0.2
117,475 + PFR28_00104 0.25 +0.7
117,475 + PFR28_00104 0.25 -0.0
117,476 - PFR28_00104 0.26 +0.8
117,476 - PFR28_00104 0.26 -1.4
117,476 - PFR28_00104 0.26 -0.1
117,476 - PFR28_00104 0.26 +0.6
117,476 - PFR28_00104 0.26 -0.2
117,476 - PFR28_00104 0.26 +0.3
117,476 - PFR28_00104 0.26 -0.2
117,476 - PFR28_00104 0.26 +0.3
117,582 + PFR28_00104 0.36 -0.6
117,817 + PFR28_00104 0.60 -0.6
117,943 + PFR28_00104 0.72 -1.0
117,943 + PFR28_00104 0.72 -1.3
117,991 + PFR28_00104 0.77 +0.1
117,992 - PFR28_00104 0.77 -0.2
117,992 - PFR28_00104 0.77 -1.0
118,162 + -0.9
118,162 + -0.7
118,162 + +0.7
118,162 + -0.4
118,162 + +0.9
118,162 + -0.3
118,162 + +0.0
118,163 - +0.8
118,163 - -0.2
118,163 - +0.3
118,163 - -0.4
118,163 - -0.1
118,163 - -0.5
118,163 - +0.7
118,163 - +0.2
118,163 - +0.1
118,163 - -0.6
118,202 + -0.0

Or see this region's nucleotide sequence