Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS25035

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
5,602,008	+				-0.4
5,602,106	+		PFLU_RS25030	0.11	-1.6
5,602,106	+		PFLU_RS25030	0.11	+0.2
5,602,192	+		PFLU_RS25030	0.24	+0.5
5,602,281	+		PFLU_RS25030	0.38	+0.8
5,602,281	+		PFLU_RS25030	0.38	+0.0
5,602,281	+		PFLU_RS25030	0.38	-0.7
5,602,281	+		PFLU_RS25030	0.38	-0.0
5,602,281	+		PFLU_RS25030	0.38	-0.0
5,602,281	+		PFLU_RS25030	0.38	+0.6
5,602,281	+		PFLU_RS25030	0.38	-0.7
5,602,281	+		PFLU_RS25030	0.38	+1.0
5,602,281	+		PFLU_RS25030	0.38	+1.0
5,602,281	+		PFLU_RS25030	0.38	+0.2
5,602,281	+		PFLU_RS25030	0.38	-1.2
5,602,281	+		PFLU_RS25030	0.38	+0.1
5,602,282	-		PFLU_RS25030	0.39	+1.4
5,602,282	-		PFLU_RS25030	0.39	-2.0
5,602,282	-		PFLU_RS25030	0.39	+0.6
5,602,282	-		PFLU_RS25030	0.39	-0.4
5,602,282	-		PFLU_RS25030	0.39	-0.9
5,602,282	-		PFLU_RS25030	0.39	-0.5
5,602,282	-		PFLU_RS25030	0.39	+0.4
5,602,282	-		PFLU_RS25030	0.39	-0.5
5,602,282	-		PFLU_RS25030	0.39	+0.7
5,602,282	-		PFLU_RS25030	0.39	-1.0
5,602,416	+		PFLU_RS25030	0.60	+0.7
5,602,416	+		PFLU_RS25030	0.60	+0.4
5,602,416	+		PFLU_RS25030	0.60	-0.2
5,602,416	+		PFLU_RS25030	0.60	+0.9
5,602,416	+		PFLU_RS25030	0.60	-0.6
5,602,416	+		PFLU_RS25030	0.60	+0.7
5,602,416	+		PFLU_RS25030	0.60	-0.9
5,602,416	+		PFLU_RS25030	0.60	+0.4
5,602,416	+		PFLU_RS25030	0.60	-1.0
5,602,417	-		PFLU_RS25030	0.60	-0.4
5,602,417	-		PFLU_RS25030	0.60	-3.6
5,602,417	-		PFLU_RS25030	0.60	-0.4
5,602,425	+		PFLU_RS25030	0.61	-0.3
5,602,425	+		PFLU_RS25030	0.61	+0.8
5,602,426	-		PFLU_RS25030	0.61	-0.6
5,602,456	-		PFLU_RS25030	0.66	+0.8
5,602,456	-		PFLU_RS25030	0.66	-0.8
5,602,512	+		PFLU_RS25030	0.75	-2.2
5,602,512	+		PFLU_RS25030	0.75	-0.4
5,602,512	+		PFLU_RS25030	0.75	+0.9
5,602,512	+		PFLU_RS25030	0.75	-2.8
5,602,512	+		PFLU_RS25030	0.75	-3.0
5,602,512	+		PFLU_RS25030	0.75	-1.4
5,602,513	-		PFLU_RS25030	0.75	-3.1
5,602,513	-		PFLU_RS25030	0.75	+0.3
5,602,593	+		PFLU_RS25030	0.87	-2.1
5,602,594	-		PFLU_RS25030	0.88	-0.5
5,602,594	-		PFLU_RS25030	0.88	+0.4
5,602,644	+				-1.8
5,602,645	-				-1.7
5,602,645	-				-0.3
5,602,693	-				-1.6
5,602,726	+				+0.4
5,602,726	+				+1.4
5,602,726	+				+1.0
5,602,726	+				-0.2
5,602,727	-				+0.6
5,602,727	-				-0.2
5,602,727	-				+0.3
5,602,727	-				-1.1
5,602,767	+				+0.2
5,602,768	-				-0.4
5,602,772	-				+0.6
5,602,795	+				-2.5
5,602,796	-				+0.3
5,602,796	-				+0.9
5,602,882	-		PFLU_RS25035	0.14	+1.3
5,602,935	+		PFLU_RS25035	0.28	+1.3
5,602,935	+		PFLU_RS25035	0.28	+0.2
5,602,936	-		PFLU_RS25035	0.28	+1.2
5,602,936	-		PFLU_RS25035	0.28	-1.2
5,602,936	-		PFLU_RS25035	0.28	-0.1
5,602,936	-		PFLU_RS25035	0.28	-2.9
5,602,964	+		PFLU_RS25035	0.36	-0.4
5,602,980	-		PFLU_RS25035	0.40	-0.1
5,603,024	+		PFLU_RS25035	0.52	-0.2
5,603,024	+		PFLU_RS25035	0.52	-0.9
5,603,024	+		PFLU_RS25035	0.52	-0.4
5,603,024	+		PFLU_RS25035	0.52	+0.5
5,603,024	+		PFLU_RS25035	0.52	-0.3
5,603,024	+		PFLU_RS25035	0.52	-0.7
5,603,024	+		PFLU_RS25035	0.52	+1.3
5,603,024	+		PFLU_RS25035	0.52	+0.7
5,603,024	+		PFLU_RS25035	0.52	+0.5
5,603,025	-		PFLU_RS25035	0.52	-0.9
5,603,025	-		PFLU_RS25035	0.52	+0.5
5,603,025	-		PFLU_RS25035	0.52	+1.1
5,603,037	+		PFLU_RS25035	0.56	-0.2
5,603,038	-		PFLU_RS25035	0.56	+0.6
5,603,039	+		PFLU_RS25035	0.56	+0.3
5,603,040	-		PFLU_RS25035	0.56	+0.6
5,603,056	-		PFLU_RS25035	0.61	+0.3
5,603,218	+				-0.8
5,603,218	+				-0.2
5,603,218	+				+0.8
5,603,225	+				+0.8
5,603,225	+				+1.4
5,603,225	+				-1.4
5,603,226	-				-1.2
5,603,244	+				-0.7
5,603,307	+				-0.1
5,603,307	+				+0.3
5,603,307	+				-0.4
5,603,308	-				-1.2
5,603,308	-				-1.0
5,603,315	+				+1.1
5,603,315	+				+1.3
5,603,316	-				-0.6
5,603,316	-				+1.5
5,603,316	-				-0.1
5,603,316	-				+0.0
5,603,316	-				-0.5
5,603,316	-				+0.2
5,603,324	-				+0.6
5,603,324	-				+1.0
5,603,324	-				-2.2
5,603,324	-				-0.0
5,603,324	-				-0.4
5,603,410	-		PFLU_RS25040	0.25	+0.7
5,603,522	+		PFLU_RS25040	0.64	-0.4
5,603,523	-		PFLU_RS25040	0.65	-0.7
5,603,707	+				-1.2
5,603,707	+				+1.9
5,603,707	+				+0.8
5,603,707	+				+0.4
5,603,707	+				-0.7
5,603,708	-				-0.4
5,603,708	-				-1.5
5,603,708	-				-0.7
5,603,713	-				-0.5
5,603,757	+				+1.0
5,603,757	+				+1.4
5,603,757	+				-2.0
5,603,758	-				-0.1
5,603,785	-				-1.3
5,603,785	-				+0.9
5,603,785	-				+0.5
5,603,785	-				+0.8
5,603,785	-				+0.9
5,603,785	-				-0.6
5,603,827	+				-0.1
5,603,836	+				-0.1
5,603,837	-				-0.1
5,603,837	-				+1.4
5,603,891	-				-0.6
5,603,945	+				-0.6
5,603,946	-				+0.1
5,603,946	-				+0.2
5,603,950	+				+0.3
5,603,950	+				+0.8
5,603,951	-				+0.1
5,604,002	+				-0.8
5,604,018	-				+0.6
5,604,076	-		PFLU_RS25045	0.15	-0.7
5,604,079	+		PFLU_RS25045	0.15	+0.8
5,604,080	-		PFLU_RS25045	0.15	-1.4
5,604,149	+		PFLU_RS25045	0.27	+0.7
5,604,175	+		PFLU_RS25045	0.32	+0.8
5,604,180	-		PFLU_RS25045	0.32	-0.5
5,604,180	-		PFLU_RS25045	0.32	-0.8
5,604,180	-		PFLU_RS25045	0.32	+1.3