Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS14445

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
3,235,110	+		PFLU_RS14435	0.77	+1.3
3,235,110	+		PFLU_RS14435	0.77	+0.1
3,235,110	+		PFLU_RS14435	0.77	-0.6
3,235,110	+		PFLU_RS14435	0.77	-0.5
3,235,110	+		PFLU_RS14435	0.77	+0.3
3,235,110	+		PFLU_RS14435	0.77	+0.4
3,235,110	+		PFLU_RS14435	0.77	-0.7
3,235,110	+		PFLU_RS14435	0.77	-1.0
3,235,110	+		PFLU_RS14435	0.77	+1.2
3,235,110	+		PFLU_RS14435	0.77	+0.7
3,235,110	+		PFLU_RS14435	0.77	+0.5
3,235,110	+		PFLU_RS14435	0.77	+1.0
3,235,111	-		PFLU_RS14435	0.77	+0.1
3,235,111	-		PFLU_RS14435	0.77	-0.0
3,235,111	-		PFLU_RS14435	0.77	+1.2
3,235,111	-		PFLU_RS14435	0.77	-0.6
3,235,111	-		PFLU_RS14435	0.77	+0.9
3,235,111	-		PFLU_RS14435	0.77	+0.6
3,235,111	-		PFLU_RS14435	0.77	-0.5
3,235,111	-		PFLU_RS14435	0.77	-0.6
3,235,111	-		PFLU_RS14435	0.77	-0.5
3,235,111	-		PFLU_RS14435	0.77	-0.0
3,235,111	-		PFLU_RS14435	0.77	+1.4
3,235,111	-		PFLU_RS14435	0.77	+0.5
3,235,111	-		PFLU_RS14435	0.77	+0.7
3,235,112	+		PFLU_RS14435	0.77	+0.1
3,235,112	+		PFLU_RS14435	0.77	-0.2
3,235,112	+		PFLU_RS14435	0.77	-0.4
3,235,112	+		PFLU_RS14435	0.77	-0.4
3,235,112	+		PFLU_RS14435	0.77	-0.6
3,235,112	+		PFLU_RS14435	0.77	-0.3
3,235,112	+		PFLU_RS14435	0.77	-0.3
3,235,112	+		PFLU_RS14435	0.77	-0.5
3,235,112	+		PFLU_RS14435	0.77	-0.9
3,235,112	+		PFLU_RS14435	0.77	+1.5
3,235,112	+		PFLU_RS14435	0.77	-0.0
3,235,112	+		PFLU_RS14435	0.77	+0.7
3,235,112	+		PFLU_RS14435	0.77	+0.3
3,235,113	-		PFLU_RS14435	0.77	+0.6
3,235,113	-		PFLU_RS14435	0.77	-0.0
3,235,113	-		PFLU_RS14435	0.77	+1.3
3,235,113	-		PFLU_RS14435	0.77	+0.6
3,235,113	-		PFLU_RS14435	0.77	-0.1
3,235,113	-		PFLU_RS14435	0.77	+0.5
3,235,113	-		PFLU_RS14435	0.77	+0.1
3,235,113	-		PFLU_RS14435	0.77	-0.4
3,235,113	-		PFLU_RS14435	0.77	-0.4
3,235,113	-		PFLU_RS14435	0.77	-0.8
3,235,113	-		PFLU_RS14435	0.77	-0.9
3,235,364	-				-0.3
3,235,364	-				-1.3
3,235,364	-				+0.5
3,235,448	+				+0.7
3,235,449	-				+1.8
3,235,526	-				-0.6
3,235,783	+		PFLU_RS14440	0.61	-0.0
3,235,952	+				+0.8
3,235,952	+				-0.2
3,235,960	+				-0.5
3,235,960	+				-1.6
3,236,200	+		PFLU_RS14445	0.38	+0.2
3,236,302	+		PFLU_RS14445	0.52	-0.6
3,236,330	-		PFLU_RS14445	0.56	+1.6
3,236,356	+		PFLU_RS14445	0.60	+0.5
3,236,356	+		PFLU_RS14445	0.60	+0.7
3,236,356	+		PFLU_RS14445	0.60	-0.0
3,236,357	-		PFLU_RS14445	0.60	+0.5
3,236,357	-		PFLU_RS14445	0.60	-1.3
3,236,357	-		PFLU_RS14445	0.60	+0.8
3,236,357	-		PFLU_RS14445	0.60	+0.3
3,236,359	-		PFLU_RS14445	0.60	+0.6
3,236,400	+		PFLU_RS14445	0.66	+0.5
3,236,470	-		PFLU_RS14445	0.76	-0.0
3,236,599	+				+0.5
3,236,600	-				+0.4
3,236,637	+				+0.6
3,236,637	+				-0.3
3,236,637	+				-0.2
3,236,637	+				+0.5
3,236,637	+				-0.2
3,236,637	+				+0.0
3,236,637	+				+0.3
3,236,637	+				-1.0
3,236,637	+				+1.0
3,236,637	+				+0.9
3,236,637	+				-0.3
3,236,638	-				+0.8
3,236,638	-				+0.0
3,236,638	-				-0.1
3,236,638	-				+1.0
3,236,638	-				+0.2
3,236,638	-				+0.8
3,236,638	-				+0.6
3,236,638	-				-0.6
3,236,638	-				-2.5
3,236,638	-				-0.6
3,236,682	+		PFLU_RS14450	0.16	+0.7
3,236,683	-		PFLU_RS14450	0.17	+1.4
3,236,683	-		PFLU_RS14450	0.17	+0.2
3,236,811	-		PFLU_RS14450	0.58	-1.3
3,236,832	+		PFLU_RS14450	0.64	+1.0
3,236,832	+		PFLU_RS14450	0.64	-0.4
3,236,832	+		PFLU_RS14450	0.64	-1.0
3,236,833	-		PFLU_RS14450	0.65	+2.5
3,236,880	-		PFLU_RS14450	0.80	-0.4
3,236,919	+				-0.2
3,236,919	+				+1.6
3,236,920	-				-0.4
3,236,990	-				+0.2
3,236,990	-				-0.8
3,236,996	-				-0.4
3,236,996	-				-0.4
3,237,016	+				+0.8
3,237,016	+				-2.2
3,237,016	+				-0.6
3,237,016	+				-0.6
3,237,016	+				+0.5
3,237,017	-				-0.8
3,237,017	-				-0.7
3,237,017	-				+0.7
3,237,036	+				-1.6
3,237,036	+				+0.6
3,237,037	-				-0.0
3,237,037	-				-0.6
3,237,085	+				+0.4
3,237,085	+				+1.0
3,237,085	+				+1.2
3,237,086	-				-0.8
3,237,130	+				+0.1
3,237,130	+				-0.2
3,237,130	+				-0.7
3,237,131	-				+0.3
3,237,145	+				+0.4
3,237,208	-		PFLU_RS14455	0.26	+0.6
3,237,208	-		PFLU_RS14455	0.26	-2.1
3,237,208	-		PFLU_RS14455	0.26	+0.3
3,237,208	-		PFLU_RS14455	0.26	+0.3
3,237,208	-		PFLU_RS14455	0.26	+1.2
3,237,241	+		PFLU_RS14455	0.35	+1.0
3,237,241	+		PFLU_RS14455	0.35	-0.4
3,237,241	+		PFLU_RS14455	0.35	-1.8
3,237,241	+		PFLU_RS14455	0.35	+1.4
3,237,242	-		PFLU_RS14455	0.35	+0.8
3,237,343	-		PFLU_RS14455	0.64	+2.0
3,237,360	+		PFLU_RS14455	0.69	-2.0
3,237,360	+		PFLU_RS14455	0.69	-1.1
3,237,360	+		PFLU_RS14455	0.69	-1.5
3,237,361	-		PFLU_RS14455	0.69	-0.0
3,237,361	-		PFLU_RS14455	0.69	-0.7
3,237,405	+		PFLU_RS14455	0.81	+0.4
3,237,405	+		PFLU_RS14455	0.81	+0.2
3,237,406	-		PFLU_RS14455	0.82	-2.0
3,237,406	-		PFLU_RS14455	0.82	+1.0
3,237,408	+		PFLU_RS14455	0.82	-0.8
3,237,409	-		PFLU_RS14455	0.82	-0.4
3,237,409	-		PFLU_RS14455	0.82	-0.4
3,237,469	-				-1.8
3,237,469	-				-0.6
3,237,491	-				-0.3
3,237,523	+				-0.6
3,237,523	+				-1.5
3,237,523	+				+1.6
3,237,523	+				+0.1
3,237,523	+				-0.3
3,237,523	+				+0.8
3,237,524	-				-1.2
3,237,524	-				+1.2
3,237,524	-				-0.5
3,237,524	-				+0.0
3,237,524	-				-0.9
3,237,524	-				+0.5
3,237,524	-				+0.2
3,237,528	+				-0.6
3,237,528	+				-1.7
3,237,529	-				-1.3
3,237,529	-				-0.4
3,237,529	-				-0.1
3,237,529	-				+0.3
3,237,529	-				+1.4
3,237,529	-				+0.1
3,237,563	+				-1.2
3,237,588	-				+0.4
3,237,627	+				+0.3
3,237,627	+				-2.6
3,237,628	-				+0.4
3,237,628	-				+0.9
3,237,628	-				+0.5
3,237,628	-				-0.4