Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13410

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
3,028,312	+		PFLU_RS13405	0.48	-0.2
3,028,313	-		PFLU_RS13405	0.48	-0.4
3,028,313	-		PFLU_RS13405	0.48	+0.1
3,028,387	+		PFLU_RS13405	0.53	-0.6
3,028,570	+		PFLU_RS13405	0.67	+1.6
3,028,570	+		PFLU_RS13405	0.67	+1.3
3,028,570	+		PFLU_RS13405	0.67	+1.5
3,028,570	+		PFLU_RS13405	0.67	+0.4
3,028,570	+		PFLU_RS13405	0.67	-0.8
3,028,570	+		PFLU_RS13405	0.67	-1.6
3,028,571	-		PFLU_RS13405	0.67	+0.4
3,028,571	-		PFLU_RS13405	0.67	-0.7
3,028,571	-		PFLU_RS13405	0.67	+0.0
3,028,571	-		PFLU_RS13405	0.67	-2.3
3,028,571	-		PFLU_RS13405	0.67	-0.0
3,028,606	+		PFLU_RS13405	0.70	-0.5
3,028,606	+		PFLU_RS13405	0.70	+0.9
3,028,607	-		PFLU_RS13405	0.70	+0.8
3,028,650	+		PFLU_RS13405	0.73	-0.2
3,028,650	+		PFLU_RS13405	0.73	+0.9
3,028,650	+		PFLU_RS13405	0.73	+0.1
3,028,650	+		PFLU_RS13405	0.73	+2.5
3,028,650	+		PFLU_RS13405	0.73	+0.1
3,028,651	-		PFLU_RS13405	0.73	+1.0
3,028,651	-		PFLU_RS13405	0.73	-0.2
3,028,666	+		PFLU_RS13405	0.74	+0.7
3,028,667	-		PFLU_RS13405	0.75	-1.2
3,028,729	+		PFLU_RS13405	0.79	+1.0
3,028,729	+		PFLU_RS13405	0.79	+1.0
3,028,729	+		PFLU_RS13405	0.79	-0.8
3,028,729	+		PFLU_RS13405	0.79	+0.7
3,028,729	+		PFLU_RS13405	0.79	-1.0
3,028,730	-		PFLU_RS13405	0.79	-0.3
3,028,730	-		PFLU_RS13405	0.79	+0.7
3,028,730	-		PFLU_RS13405	0.79	-0.1
3,028,730	-		PFLU_RS13405	0.79	+0.7
3,028,730	-		PFLU_RS13405	0.79	-0.7
3,028,746	+		PFLU_RS13405	0.80	+0.9
3,028,746	+		PFLU_RS13405	0.80	+0.8
3,028,746	+		PFLU_RS13405	0.80	-0.6
3,028,746	+		PFLU_RS13405	0.80	+0.4
3,028,747	-		PFLU_RS13405	0.81	+0.0
3,028,747	-		PFLU_RS13405	0.81	-2.4
3,028,747	-		PFLU_RS13405	0.81	+0.0
3,028,747	-		PFLU_RS13405	0.81	-0.7
3,028,747	-		PFLU_RS13405	0.81	-0.5
3,029,033	+				-0.4
3,029,033	+				+0.4
3,029,047	+				-0.4
3,029,047	+				-1.2
3,029,047	+				+0.9
3,029,047	+				-1.2
3,029,047	+				-0.8
3,029,047	+				-0.1
3,029,047	+				-0.9
3,029,047	+				-1.2
3,029,048	-				-0.8
3,029,048	-				+1.2
3,029,048	-				+0.0
3,029,048	-				-0.7
3,029,048	-				-0.3
3,029,066	+				+0.7
3,029,115	+				-0.5
3,029,251	+				+1.6
3,029,251	+				+0.0
3,029,252	-				-0.7
3,029,327	-		PFLU_RS13410	0.16	+2.0
3,029,327	-		PFLU_RS13410	0.16	+0.4
3,029,410	+		PFLU_RS13410	0.25	-0.7
3,029,427	+		PFLU_RS13410	0.27	+0.7
3,029,427	+		PFLU_RS13410	0.27	+0.8
3,029,428	-		PFLU_RS13410	0.27	-1.2
3,029,428	-		PFLU_RS13410	0.27	+0.3
3,029,428	-		PFLU_RS13410	0.27	-0.2
3,029,499	+		PFLU_RS13410	0.35	+0.1
3,029,499	+		PFLU_RS13410	0.35	+0.5
3,029,499	+		PFLU_RS13410	0.35	-1.1
3,029,499	+		PFLU_RS13410	0.35	-0.1
3,029,499	+		PFLU_RS13410	0.35	+0.8
3,029,500	-		PFLU_RS13410	0.35	-1.0
3,029,500	-		PFLU_RS13410	0.35	-0.1
3,029,500	-		PFLU_RS13410	0.35	-2.7
3,029,500	-		PFLU_RS13410	0.35	-0.6
3,029,500	-		PFLU_RS13410	0.35	+0.2
3,029,527	+		PFLU_RS13410	0.38	-0.6
3,029,577	+		PFLU_RS13410	0.43	+0.4
3,029,578	-		PFLU_RS13410	0.44	-1.0
3,029,909	-		PFLU_RS13410	0.80	-0.6
3,029,909	-		PFLU_RS13410	0.80	+0.0
3,029,910	+		PFLU_RS13410	0.80	+0.4
3,029,910	+		PFLU_RS13410	0.80	+0.3
3,029,910	+		PFLU_RS13410	0.80	-0.3
3,029,910	+		PFLU_RS13410	0.80	+0.8
3,029,910	+		PFLU_RS13410	0.80	+0.0
3,029,910	+		PFLU_RS13410	0.80	+1.8
3,029,910	+		PFLU_RS13410	0.80	-1.4
3,029,911	-		PFLU_RS13410	0.80	-0.8
3,029,911	-		PFLU_RS13410	0.80	-0.0
3,029,911	-		PFLU_RS13410	0.80	+0.9
3,029,911	-		PFLU_RS13410	0.80	+0.2
3,029,961	+		PFLU_RS13410	0.86	+0.6
3,029,962	-		PFLU_RS13410	0.86	-0.6
3,030,015	+				-2.4
3,030,016	-				-0.6
3,030,102	+				+0.4
3,030,103	-				+1.7
3,030,103	-				+0.4
3,030,164	+				+1.6
3,030,165	-				-0.1
3,030,165	-				+0.4
3,030,165	-				+1.2
3,030,201	+				-1.0
3,030,201	+				+0.3
3,030,201	+				-0.3
3,030,201	+				+0.6
3,030,201	+				-1.0
3,030,201	+				+1.0
3,030,201	+				-0.3
3,030,201	+				+1.0
3,030,201	+				+0.9
3,030,201	+				+1.0
3,030,201	+				+1.4
3,030,201	+				+1.6
3,030,201	+				-0.0
3,030,201	+				+0.7
3,030,201	+				-0.6
3,030,201	+				+0.8
3,030,201	+				-0.6
3,030,202	-				-0.4
3,030,202	-				+0.8
3,030,202	-				-0.4
3,030,202	-				+1.2
3,030,202	-				-0.8
3,030,202	-				+0.7
3,030,202	-				+0.2
3,030,202	-				+0.5
3,030,202	-				+0.8
3,030,202	-				+0.2
3,030,202	-				-0.6
3,030,202	-				+0.6
3,030,202	-				+0.7
3,030,202	-				-0.2
3,030,202	-				-0.8
3,030,202	-				+0.2
3,030,208	+				+0.9
3,030,393	+		PFLU_RS13415	0.18	-1.3
3,030,496	+		PFLU_RS13415	0.26	-0.1
3,030,574	+		PFLU_RS13415	0.32	+1.4
3,030,574	+		PFLU_RS13415	0.32	+1.4
3,030,574	+		PFLU_RS13415	0.32	+0.3
3,030,647	+		PFLU_RS13415	0.38	+0.7
3,030,672	+		PFLU_RS13415	0.40	+0.8
3,030,673	-		PFLU_RS13415	0.40	+0.8
3,030,673	-		PFLU_RS13415	0.40	+1.9
3,030,681	+		PFLU_RS13415	0.40	+2.3
3,030,681	+		PFLU_RS13415	0.40	-1.2
3,030,681	+		PFLU_RS13415	0.40	-0.1
3,030,681	+		PFLU_RS13415	0.40	-0.6
3,030,681	+		PFLU_RS13415	0.40	+1.2
3,030,682	-		PFLU_RS13415	0.40	-0.8
3,030,682	-		PFLU_RS13415	0.40	+0.6
3,030,682	-		PFLU_RS13415	0.40	+1.0
3,030,682	-		PFLU_RS13415	0.40	+1.0
3,030,946	-		PFLU_RS13415	0.61	+0.7
3,031,022	+		PFLU_RS13415	0.67	+0.0