Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07705

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS07700 and PFLU_RS07705 are separated by 9 nucleotidesPFLU_RS07705 and PFLU_RS07710 are separated by 11 nucleotides PFLU_RS07700: PFLU_RS07700 - DEAD/DEAH box helicase, at 1,711,868 to 1,714,561 _RS07700 PFLU_RS07705: PFLU_RS07705 - hypothetical protein, at 1,714,571 to 1,715,137 _RS07705 PFLU_RS07710: PFLU_RS07710 - transcription-repair coupling factor, at 1,715,149 to 1,718,598 _RS07710 Position (kb) 1714 1715 1716Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1713.810 kb on - strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.038 kb on + strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.039 kb on - strand, within PFLU_RS07700at 1714.050 kb on + strand, within PFLU_RS07700at 1714.050 kb on + strand, within PFLU_RS07700at 1714.050 kb on + strand, within PFLU_RS07700at 1714.050 kb on + strand, within PFLU_RS07700at 1714.051 kb on - strand, within PFLU_RS07700at 1714.051 kb on - strand, within PFLU_RS07700at 1714.051 kb on - strand, within PFLU_RS07700at 1714.083 kb on + strand, within PFLU_RS07700at 1714.083 kb on + strand, within PFLU_RS07700at 1714.083 kb on + strand, within PFLU_RS07700at 1714.083 kb on + strand, within PFLU_RS07700at 1714.084 kb on - strand, within PFLU_RS07700at 1714.084 kb on - strand, within PFLU_RS07700at 1714.084 kb on - strand, within PFLU_RS07700at 1714.084 kb on - strand, within PFLU_RS07700at 1714.160 kb on + strand, within PFLU_RS07700at 1714.160 kb on + strand, within PFLU_RS07700at 1714.160 kb on + strand, within PFLU_RS07700at 1714.160 kb on + strand, within PFLU_RS07700at 1714.160 kb on + strand, within PFLU_RS07700at 1714.160 kb on + strand, within PFLU_RS07700at 1714.160 kb on + strand, within PFLU_RS07700at 1714.160 kb on + strand, within PFLU_RS07700at 1714.161 kb on - strand, within PFLU_RS07700at 1714.161 kb on - strand, within PFLU_RS07700at 1714.161 kb on - strand, within PFLU_RS07700at 1714.161 kb on - strand, within PFLU_RS07700at 1714.161 kb on - strand, within PFLU_RS07700at 1714.161 kb on - strand, within PFLU_RS07700at 1714.161 kb on - strand, within PFLU_RS07700at 1714.324 kb on + strandat 1714.324 kb on + strandat 1714.324 kb on + strandat 1714.324 kb on + strandat 1714.324 kb on + strandat 1714.325 kb on - strandat 1714.473 kb on + strandat 1714.662 kb on + strand, within PFLU_RS07705at 1714.662 kb on + strand, within PFLU_RS07705at 1714.662 kb on + strand, within PFLU_RS07705at 1714.662 kb on + strand, within PFLU_RS07705at 1714.662 kb on + strand, within PFLU_RS07705at 1714.662 kb on + strand, within PFLU_RS07705at 1714.662 kb on + strand, within PFLU_RS07705at 1714.662 kb on + strand, within PFLU_RS07705at 1714.663 kb on - strand, within PFLU_RS07705at 1714.663 kb on - strand, within PFLU_RS07705at 1714.663 kb on - strand, within PFLU_RS07705at 1714.663 kb on - strand, within PFLU_RS07705at 1714.732 kb on + strand, within PFLU_RS07705at 1714.732 kb on + strand, within PFLU_RS07705at 1714.732 kb on + strand, within PFLU_RS07705at 1714.732 kb on + strand, within PFLU_RS07705at 1714.732 kb on + strand, within PFLU_RS07705at 1714.733 kb on - strand, within PFLU_RS07705at 1714.908 kb on + strand, within PFLU_RS07705at 1714.908 kb on + strand, within PFLU_RS07705at 1714.908 kb on + strand, within PFLU_RS07705at 1714.908 kb on + strand, within PFLU_RS07705at 1714.908 kb on + strand, within PFLU_RS07705at 1714.909 kb on - strand, within PFLU_RS07705at 1714.909 kb on - strand, within PFLU_RS07705at 1714.909 kb on - strand, within PFLU_RS07705at 1714.909 kb on - strand, within PFLU_RS07705at 1715.193 kb on + strandat 1715.193 kb on + strandat 1715.193 kb on + strandat 1715.193 kb on + strandat 1715.193 kb on + strandat 1715.193 kb on + strandat 1715.193 kb on + strandat 1715.193 kb on + strandat 1715.194 kb on - strandat 1715.194 kb on - strandat 1715.194 kb on - strandat 1715.194 kb on - strandat 1715.194 kb on - strandat 1715.196 kb on + strandat 1715.196 kb on + strandat 1715.196 kb on + strandat 1715.197 kb on - strandat 1715.197 kb on - strandat 1715.197 kb on - strandat 1715.197 kb on - strandat 1715.197 kb on - strandat 1715.244 kb on + strandat 1715.245 kb on - strandat 1715.513 kb on + strand, within PFLU_RS07710at 1715.546 kb on + strand, within PFLU_RS07710at 1715.546 kb on + strand, within PFLU_RS07710at 1715.546 kb on + strand, within PFLU_RS07710at 1715.547 kb on - strand, within PFLU_RS07710at 1715.547 kb on - strand, within PFLU_RS07710at 1715.547 kb on - strand, within PFLU_RS07710at 1715.667 kb on + strand, within PFLU_RS07710at 1715.667 kb on + strand, within PFLU_RS07710at 1715.668 kb on - strand, within PFLU_RS07710at 1715.668 kb on - strand, within PFLU_RS07710at 1715.668 kb on - strand, within PFLU_RS07710at 1715.668 kb on - strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.669 kb on + strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.670 kb on - strand, within PFLU_RS07710at 1715.855 kb on + strand, within PFLU_RS07710at 1715.855 kb on + strand, within PFLU_RS07710at 1715.855 kb on + strand, within PFLU_RS07710at 1715.855 kb on + strand, within PFLU_RS07710at 1715.855 kb on + strand, within PFLU_RS07710at 1715.855 kb on + strand, within PFLU_RS07710at 1715.855 kb on + strand, within PFLU_RS07710at 1715.855 kb on + strand, within PFLU_RS07710at 1715.856 kb on - strand, within PFLU_RS07710at 1715.856 kb on - strand, within PFLU_RS07710at 1715.861 kb on + strand, within PFLU_RS07710at 1715.861 kb on + strand, within PFLU_RS07710at 1715.862 kb on - strand, within PFLU_RS07710at 1715.862 kb on - strand, within PFLU_RS07710at 1715.862 kb on - strand, within PFLU_RS07710at 1715.862 kb on - strand, within PFLU_RS07710at 1716.021 kb on - strand, within PFLU_RS07710at 1716.021 kb on - strand, within PFLU_RS07710at 1716.021 kb on - strand, within PFLU_RS07710

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,713,810 - PFLU_RS07700 0.72 +0.1
1,714,038 + PFLU_RS07700 0.81 -1.3
1,714,038 + PFLU_RS07700 0.81 +1.6
1,714,038 + PFLU_RS07700 0.81 +0.8
1,714,038 + PFLU_RS07700 0.81 +1.0
1,714,038 + PFLU_RS07700 0.81 +0.9
1,714,038 + PFLU_RS07700 0.81 +2.5
1,714,038 + PFLU_RS07700 0.81 -1.0
1,714,038 + PFLU_RS07700 0.81 +1.0
1,714,038 + PFLU_RS07700 0.81 +0.6
1,714,038 + PFLU_RS07700 0.81 +0.2
1,714,038 + PFLU_RS07700 0.81 -0.5
1,714,038 + PFLU_RS07700 0.81 +0.9
1,714,038 + PFLU_RS07700 0.81 +0.1
1,714,038 + PFLU_RS07700 0.81 +0.7
1,714,038 + PFLU_RS07700 0.81 -0.2
1,714,039 - PFLU_RS07700 0.81 +0.3
1,714,039 - PFLU_RS07700 0.81 -0.4
1,714,039 - PFLU_RS07700 0.81 -1.8
1,714,039 - PFLU_RS07700 0.81 +0.1
1,714,039 - PFLU_RS07700 0.81 +0.4
1,714,039 - PFLU_RS07700 0.81 +0.9
1,714,039 - PFLU_RS07700 0.81 -1.9
1,714,039 - PFLU_RS07700 0.81 -0.0
1,714,039 - PFLU_RS07700 0.81 +1.4
1,714,039 - PFLU_RS07700 0.81 -0.3
1,714,039 - PFLU_RS07700 0.81 +0.3
1,714,039 - PFLU_RS07700 0.81 -0.9
1,714,039 - PFLU_RS07700 0.81 +1.4
1,714,039 - PFLU_RS07700 0.81 -0.7
1,714,039 - PFLU_RS07700 0.81 +0.5
1,714,039 - PFLU_RS07700 0.81 -0.3
1,714,050 + PFLU_RS07700 0.81 -1.9
1,714,050 + PFLU_RS07700 0.81 +0.5
1,714,050 + PFLU_RS07700 0.81 +0.0
1,714,050 + PFLU_RS07700 0.81 +0.6
1,714,051 - PFLU_RS07700 0.81 -1.3
1,714,051 - PFLU_RS07700 0.81 +0.0
1,714,051 - PFLU_RS07700 0.81 -2.7
1,714,083 + PFLU_RS07700 0.82 +0.6
1,714,083 + PFLU_RS07700 0.82 -0.8
1,714,083 + PFLU_RS07700 0.82 +0.8
1,714,083 + PFLU_RS07700 0.82 -0.3
1,714,084 - PFLU_RS07700 0.82 +1.7
1,714,084 - PFLU_RS07700 0.82 -0.6
1,714,084 - PFLU_RS07700 0.82 -0.0
1,714,084 - PFLU_RS07700 0.82 +0.4
1,714,160 + PFLU_RS07700 0.85 +0.9
1,714,160 + PFLU_RS07700 0.85 -0.2
1,714,160 + PFLU_RS07700 0.85 +0.8
1,714,160 + PFLU_RS07700 0.85 -0.5
1,714,160 + PFLU_RS07700 0.85 +0.0
1,714,160 + PFLU_RS07700 0.85 +1.1
1,714,160 + PFLU_RS07700 0.85 +0.2
1,714,160 + PFLU_RS07700 0.85 -0.7
1,714,161 - PFLU_RS07700 0.85 -0.4
1,714,161 - PFLU_RS07700 0.85 +0.6
1,714,161 - PFLU_RS07700 0.85 +0.5
1,714,161 - PFLU_RS07700 0.85 -1.1
1,714,161 - PFLU_RS07700 0.85 -0.8
1,714,161 - PFLU_RS07700 0.85 +0.8
1,714,161 - PFLU_RS07700 0.85 +0.4
1,714,324 + -0.6
1,714,324 + -0.8
1,714,324 + -2.3
1,714,324 + -0.7
1,714,324 + +0.1
1,714,325 - +0.1
1,714,473 + +0.7
1,714,662 + PFLU_RS07705 0.16 +0.8
1,714,662 + PFLU_RS07705 0.16 -0.8
1,714,662 + PFLU_RS07705 0.16 +0.9
1,714,662 + PFLU_RS07705 0.16 -0.3
1,714,662 + PFLU_RS07705 0.16 -0.7
1,714,662 + PFLU_RS07705 0.16 +0.3
1,714,662 + PFLU_RS07705 0.16 +0.6
1,714,662 + PFLU_RS07705 0.16 +0.3
1,714,663 - PFLU_RS07705 0.16 +0.8
1,714,663 - PFLU_RS07705 0.16 +1.3
1,714,663 - PFLU_RS07705 0.16 +1.7
1,714,663 - PFLU_RS07705 0.16 +0.4
1,714,732 + PFLU_RS07705 0.28 -0.9
1,714,732 + PFLU_RS07705 0.28 +0.8
1,714,732 + PFLU_RS07705 0.28 +2.0
1,714,732 + PFLU_RS07705 0.28 -0.6
1,714,732 + PFLU_RS07705 0.28 +0.6
1,714,733 - PFLU_RS07705 0.29 +0.9
1,714,908 + PFLU_RS07705 0.59 +1.1
1,714,908 + PFLU_RS07705 0.59 +0.1
1,714,908 + PFLU_RS07705 0.59 +0.1
1,714,908 + PFLU_RS07705 0.59 -1.1
1,714,908 + PFLU_RS07705 0.59 -0.1
1,714,909 - PFLU_RS07705 0.60 -0.4
1,714,909 - PFLU_RS07705 0.60 -0.9
1,714,909 - PFLU_RS07705 0.60 +0.3
1,714,909 - PFLU_RS07705 0.60 +0.4
1,715,193 + +0.3
1,715,193 + +4.0
1,715,193 + +1.7
1,715,193 + -0.0
1,715,193 + +0.3
1,715,193 + -2.8
1,715,193 + +0.8
1,715,193 + +0.0
1,715,194 - +1.1
1,715,194 - +0.8
1,715,194 - +0.0
1,715,194 - +0.4
1,715,194 - -0.8
1,715,196 + +0.4
1,715,196 + -0.3
1,715,196 + -0.3
1,715,197 - +0.1
1,715,197 - +0.7
1,715,197 - -1.3
1,715,197 - -0.2
1,715,197 - +0.7
1,715,244 + -0.2
1,715,245 - +0.3
1,715,513 + PFLU_RS07710 0.11 +0.4
1,715,546 + PFLU_RS07710 0.12 +0.3
1,715,546 + PFLU_RS07710 0.12 +0.7
1,715,546 + PFLU_RS07710 0.12 -1.9
1,715,547 - PFLU_RS07710 0.12 +0.7
1,715,547 - PFLU_RS07710 0.12 +0.1
1,715,547 - PFLU_RS07710 0.12 +0.0
1,715,667 + PFLU_RS07710 0.15 +0.7
1,715,667 + PFLU_RS07710 0.15 -0.2
1,715,668 - PFLU_RS07710 0.15 -0.1
1,715,668 - PFLU_RS07710 0.15 -1.1
1,715,668 - PFLU_RS07710 0.15 +0.8
1,715,668 - PFLU_RS07710 0.15 +0.6
1,715,669 + PFLU_RS07710 0.15 +1.1
1,715,669 + PFLU_RS07710 0.15 +1.5
1,715,669 + PFLU_RS07710 0.15 +1.4
1,715,669 + PFLU_RS07710 0.15 +0.7
1,715,669 + PFLU_RS07710 0.15 +0.2
1,715,669 + PFLU_RS07710 0.15 +0.6
1,715,669 + PFLU_RS07710 0.15 +0.8
1,715,669 + PFLU_RS07710 0.15 +3.5
1,715,669 + PFLU_RS07710 0.15 +0.7
1,715,669 + PFLU_RS07710 0.15 +1.2
1,715,669 + PFLU_RS07710 0.15 -0.8
1,715,669 + PFLU_RS07710 0.15 -0.0
1,715,669 + PFLU_RS07710 0.15 +0.6
1,715,669 + PFLU_RS07710 0.15 +0.1
1,715,669 + PFLU_RS07710 0.15 -0.6
1,715,669 + PFLU_RS07710 0.15 -0.8
1,715,669 + PFLU_RS07710 0.15 -0.6
1,715,670 - PFLU_RS07710 0.15 -0.6
1,715,670 - PFLU_RS07710 0.15 +0.5
1,715,670 - PFLU_RS07710 0.15 +0.4
1,715,670 - PFLU_RS07710 0.15 +0.4
1,715,670 - PFLU_RS07710 0.15 +0.4
1,715,670 - PFLU_RS07710 0.15 +1.0
1,715,670 - PFLU_RS07710 0.15 -0.2
1,715,670 - PFLU_RS07710 0.15 +0.5
1,715,670 - PFLU_RS07710 0.15 -1.5
1,715,670 - PFLU_RS07710 0.15 -1.5
1,715,670 - PFLU_RS07710 0.15 +0.4
1,715,670 - PFLU_RS07710 0.15 +0.7
1,715,670 - PFLU_RS07710 0.15 +0.4
1,715,670 - PFLU_RS07710 0.15 +0.9
1,715,855 + PFLU_RS07710 0.20 +0.4
1,715,855 + PFLU_RS07710 0.20 +0.6
1,715,855 + PFLU_RS07710 0.20 +0.4
1,715,855 + PFLU_RS07710 0.20 +0.3
1,715,855 + PFLU_RS07710 0.20 -0.1
1,715,855 + PFLU_RS07710 0.20 +1.1
1,715,855 + PFLU_RS07710 0.20 -0.3
1,715,855 + PFLU_RS07710 0.20 -2.1
1,715,856 - PFLU_RS07710 0.20 +0.8
1,715,856 - PFLU_RS07710 0.20 +0.7
1,715,861 + PFLU_RS07710 0.21 +1.7
1,715,861 + PFLU_RS07710 0.21 -2.1
1,715,862 - PFLU_RS07710 0.21 +0.1
1,715,862 - PFLU_RS07710 0.21 -0.5
1,715,862 - PFLU_RS07710 0.21 +0.4
1,715,862 - PFLU_RS07710 0.21 -0.9
1,716,021 - PFLU_RS07710 0.25 +0.4
1,716,021 - PFLU_RS07710 0.25 -0.1
1,716,021 - PFLU_RS07710 0.25 +1.0

Or see this region's nucleotide sequence