Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05780

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
1,302,774	+		PFLU_RS05770	0.35	+1.3
1,302,775	-		PFLU_RS05770	0.35	+0.4
1,302,775	-		PFLU_RS05770	0.35	-1.2
1,302,775	-		PFLU_RS05770	0.35	+0.1
1,302,777	+		PFLU_RS05770	0.36	+1.7
1,302,777	+		PFLU_RS05770	0.36	+0.1
1,302,777	+		PFLU_RS05770	0.36	+0.5
1,302,777	+		PFLU_RS05770	0.36	+1.3
1,302,777	+		PFLU_RS05770	0.36	-1.1
1,302,777	+		PFLU_RS05770	0.36	+0.9
1,302,778	-		PFLU_RS05770	0.36	-0.6
1,302,778	-		PFLU_RS05770	0.36	+0.4
1,302,778	-		PFLU_RS05770	0.36	-0.1
1,302,778	-		PFLU_RS05770	0.36	-1.3
1,302,778	-		PFLU_RS05770	0.36	-0.6
1,302,778	-		PFLU_RS05770	0.36	+0.1
1,302,858	+		PFLU_RS05770	0.58	+0.9
1,302,858	+		PFLU_RS05770	0.58	+0.4
1,302,858	+		PFLU_RS05770	0.58	+0.3
1,302,858	+		PFLU_RS05770	0.58	-1.7
1,302,858	+		PFLU_RS05770	0.58	+0.3
1,302,858	+		PFLU_RS05770	0.58	+1.2
1,302,859	-		PFLU_RS05770	0.58	-0.3
1,302,859	-		PFLU_RS05770	0.58	-0.2
1,302,859	-		PFLU_RS05770	0.58	-1.9
1,302,859	-		PFLU_RS05770	0.58	+0.3
1,302,859	-		PFLU_RS05770	0.58	+0.3
1,302,859	-		PFLU_RS05770	0.58	-0.8
1,302,859	-		PFLU_RS05770	0.58	-2.4
1,303,150	+		PFLU_RS05775	0.29	+0.7
1,303,150	+		PFLU_RS05775	0.29	+1.2
1,303,151	-		PFLU_RS05775	0.29	+1.3
1,303,154	+		PFLU_RS05775	0.30	-0.2
1,303,154	+		PFLU_RS05775	0.30	-0.1
1,303,154	+		PFLU_RS05775	0.30	+2.2
1,303,155	-		PFLU_RS05775	0.30	-0.5
1,303,155	-		PFLU_RS05775	0.30	-1.0
1,303,155	-		PFLU_RS05775	0.30	+0.8
1,303,155	-		PFLU_RS05775	0.30	-0.8
1,303,155	-		PFLU_RS05775	0.30	+2.3
1,303,155	-		PFLU_RS05775	0.30	+1.2
1,303,155	-		PFLU_RS05775	0.30	-0.2
1,303,160	+		PFLU_RS05775	0.31	+0.2
1,303,161	-		PFLU_RS05775	0.31	-0.9
1,303,186	+		PFLU_RS05775	0.36	-0.6
1,303,186	+		PFLU_RS05775	0.36	-0.7
1,303,186	+		PFLU_RS05775	0.36	-0.1
1,303,186	+		PFLU_RS05775	0.36	-1.0
1,303,187	-		PFLU_RS05775	0.37	-0.9
1,303,187	-		PFLU_RS05775	0.37	-0.4
1,303,187	-		PFLU_RS05775	0.37	-1.3
1,303,187	-		PFLU_RS05775	0.37	-0.2
1,303,187	-		PFLU_RS05775	0.37	+0.3
1,303,187	-		PFLU_RS05775	0.37	-0.4
1,303,190	+		PFLU_RS05775	0.37	+0.2
1,303,191	-		PFLU_RS05775	0.37	-0.9
1,303,191	-		PFLU_RS05775	0.37	+0.6
1,303,244	+		PFLU_RS05775	0.48	+0.6
1,303,244	+		PFLU_RS05775	0.48	+0.4
1,303,244	+		PFLU_RS05775	0.48	+0.5
1,303,244	+		PFLU_RS05775	0.48	-1.2
1,303,245	-		PFLU_RS05775	0.48	+0.3
1,303,245	-		PFLU_RS05775	0.48	+0.6
1,303,245	-		PFLU_RS05775	0.48	-0.9
1,303,300	+		PFLU_RS05775	0.60	+0.0
1,303,300	+		PFLU_RS05775	0.60	+0.0
1,303,301	-		PFLU_RS05775	0.60	-0.4
1,303,301	-		PFLU_RS05775	0.60	+0.4
1,303,301	-		PFLU_RS05775	0.60	+0.4
1,303,353	-		PFLU_RS05775	0.71	-1.1
1,303,353	-		PFLU_RS05775	0.71	+1.2
1,303,353	-		PFLU_RS05775	0.71	+0.6
1,303,393	+		PFLU_RS05775	0.79	-0.1
1,303,393	+		PFLU_RS05775	0.79	+0.3
1,303,394	-		PFLU_RS05775	0.79	+0.6
1,303,479	+				+0.1
1,303,479	+				+0.1
1,303,479	+				-1.7
1,303,479	+				+1.4
1,303,480	-				-0.0
1,303,480	-				+0.6
1,303,480	-				+0.4
1,303,480	-				-2.1
1,303,480	-				+1.3
1,303,480	-				+0.7
1,303,480	-				+0.1
1,303,490	-				+0.8
1,303,490	-				-0.5
1,303,520	-				+0.2
1,303,528	-				+0.2
1,303,528	-				+0.0
1,303,529	+				+0.9
1,303,529	+				+1.0
1,303,529	+				+1.7
1,303,530	-				-0.4
1,303,530	-				+0.9
1,303,539	+				+0.4
1,303,539	+				-0.3
1,303,539	+				-0.7
1,303,539	+				+1.4
1,303,539	+				+0.7
1,303,539	+				-0.3
1,303,539	+				-0.9
1,303,539	+				+0.5
1,303,539	+				-0.1
1,303,540	-				+0.9
1,303,540	-				-0.2
1,303,540	-				-0.2
1,303,540	-				-1.1
1,303,540	-				+0.5
1,303,540	-				+0.3
1,303,540	-				+0.3
1,303,540	-				-0.3
1,303,540	-				-0.8
1,303,540	-				-0.3
1,303,540	-				+0.2
1,303,540	-				-0.3
1,303,541	+				-0.1
1,303,541	+				+0.0
1,303,542	-				-0.4
1,303,542	-				+0.7
1,303,542	-				+0.7
1,303,542	-				-0.2
1,303,542	-				-0.4
1,303,542	-				-0.4
1,303,543	+				+0.9
1,303,543	+				+1.2
1,303,543	+				-1.6
1,303,543	+				-1.4
1,303,543	+				+1.6
1,303,543	+				+0.4
1,303,544	-				-1.5
1,303,544	-				+0.5
1,303,544	-				-1.7
1,303,544	-				+1.5
1,303,544	-				-0.3
1,303,544	-				-0.3
1,303,544	-				+1.3
1,303,596	-				-0.2
1,303,639	+				-0.6
1,303,639	+				+0.2
1,303,639	+				-2.0
1,303,639	+				+0.5
1,303,639	+				+0.6
1,303,639	+				-0.8
1,303,640	-				-0.0
1,303,640	-				+0.7
1,303,640	-				+1.1
1,303,661	-				+1.0
1,303,662	+				+0.5
1,303,693	+				+0.8
1,303,693	+				+0.3
1,303,694	-				-1.3
1,303,699	+				+1.3
1,303,699	+				+1.1
1,303,700	-				+0.5
1,303,707	+				+1.5
1,303,713	-				+0.3
1,303,783	+				-0.9
1,303,783	+				-1.8
1,303,792	-				+0.3
1,303,792	-				-0.2
1,303,931	+		PFLU_RS05780	0.23	-1.8
1,303,932	-		PFLU_RS05780	0.23	+0.0
1,304,028	+		PFLU_RS05780	0.36	-0.9
1,304,028	+		PFLU_RS05780	0.36	+0.3
1,304,028	+		PFLU_RS05780	0.36	-0.3
1,304,028	+		PFLU_RS05780	0.36	-0.4
1,304,028	+		PFLU_RS05780	0.36	-0.4
1,304,028	+		PFLU_RS05780	0.36	-0.4
1,304,028	+		PFLU_RS05780	0.36	-0.1
1,304,028	+		PFLU_RS05780	0.36	-2.4
1,304,028	+		PFLU_RS05780	0.36	-2.0
1,304,028	+		PFLU_RS05780	0.36	+1.2
1,304,028	+		PFLU_RS05780	0.36	-1.9
1,304,028	+		PFLU_RS05780	0.36	-2.6
1,304,028	+		PFLU_RS05780	0.36	-0.2
1,304,028	+		PFLU_RS05780	0.36	-0.4
1,304,028	+		PFLU_RS05780	0.36	-0.9
1,304,028	+		PFLU_RS05780	0.36	-2.0
1,304,028	+		PFLU_RS05780	0.36	-2.9
1,304,028	+		PFLU_RS05780	0.36	-1.9
1,304,029	-		PFLU_RS05780	0.36	-0.7
1,304,029	-		PFLU_RS05780	0.36	+0.9
1,304,029	-		PFLU_RS05780	0.36	-1.4
1,304,029	-		PFLU_RS05780	0.36	-1.3
1,304,029	-		PFLU_RS05780	0.36	-1.9
1,304,029	-		PFLU_RS05780	0.36	-2.6
1,304,029	-		PFLU_RS05780	0.36	+0.3
1,304,029	-		PFLU_RS05780	0.36	-2.3
1,304,029	-		PFLU_RS05780	0.36	+0.9
1,304,029	-		PFLU_RS05780	0.36	-0.1
1,304,029	-		PFLU_RS05780	0.36	+0.3
1,304,029	-		PFLU_RS05780	0.36	-1.3
1,304,029	-		PFLU_RS05780	0.36	-0.9
1,304,029	-		PFLU_RS05780	0.36	-2.1
1,304,029	-		PFLU_RS05780	0.36	+0.8
1,304,029	-		PFLU_RS05780	0.36	-1.7
1,304,180	-		PFLU_RS05780	0.57	-0.1
1,304,230	+		PFLU_RS05780	0.64	+0.6
1,304,230	+		PFLU_RS05780	0.64	-2.1
1,304,230	+		PFLU_RS05780	0.64	-0.9
1,304,230	+		PFLU_RS05780	0.64	-0.2
1,304,230	+		PFLU_RS05780	0.64	-2.8
1,304,230	+		PFLU_RS05780	0.64	-0.3
1,304,230	+		PFLU_RS05780	0.64	-0.4
1,304,230	+		PFLU_RS05780	0.64	-0.1
1,304,230	+		PFLU_RS05780	0.64	+2.9
1,304,230	+		PFLU_RS05780	0.64	+0.7
1,304,230	+		PFLU_RS05780	0.64	-3.2
1,304,230	+		PFLU_RS05780	0.64	-1.8
1,304,230	+		PFLU_RS05780	0.64	-0.4
1,304,230	+		PFLU_RS05780	0.64	-2.1
1,304,231	-		PFLU_RS05780	0.64	-0.7
1,304,231	-		PFLU_RS05780	0.64	-0.4
1,304,231	-		PFLU_RS05780	0.64	-1.8
1,304,231	-		PFLU_RS05780	0.64	-1.8
1,304,231	-		PFLU_RS05780	0.64	+0.3
1,304,231	-		PFLU_RS05780	0.64	-0.4
1,304,231	-		PFLU_RS05780	0.64	-3.3
1,304,231	-		PFLU_RS05780	0.64	-0.1
1,304,231	-		PFLU_RS05780	0.64	+0.3
1,304,231	-		PFLU_RS05780	0.64	-1.3
1,304,231	-		PFLU_RS05780	0.64	+0.3
1,304,231	-		PFLU_RS05780	0.64	-2.0
1,304,231	-		PFLU_RS05780	0.64	-2.1
1,304,231	-		PFLU_RS05780	0.64	-0.1
1,304,231	-		PFLU_RS05780	0.64	-0.1
1,304,231	-		PFLU_RS05780	0.64	+0.8
1,304,231	-		PFLU_RS05780	0.64	-1.1
1,304,231	-		PFLU_RS05780	0.64	-0.7
1,304,231	-		PFLU_RS05780	0.64	-2.7
1,304,315	+		PFLU_RS05780	0.75	-2.8
1,304,315	+		PFLU_RS05780	0.75	-1.9
1,304,315	+		PFLU_RS05780	0.75	-1.7
1,304,315	+		PFLU_RS05780	0.75	-2.9
1,304,315	+		PFLU_RS05780	0.75	-0.8
1,304,315	+		PFLU_RS05780	0.75	-1.6
1,304,316	-		PFLU_RS05780	0.75	-0.1
1,304,316	-		PFLU_RS05780	0.75	-1.8
1,304,316	-		PFLU_RS05780	0.75	-0.9
1,304,316	-		PFLU_RS05780	0.75	-0.8
1,304,316	-		PFLU_RS05780	0.75	-1.4
1,304,316	-		PFLU_RS05780	0.75	-1.3
1,304,420	+		PFLU_RS05780	0.89	-2.0
1,304,420	+		PFLU_RS05780	0.89	-2.8
1,304,421	-		PFLU_RS05780	0.90	-0.9
1,304,421	-		PFLU_RS05780	0.90	-1.1
1,304,421	-		PFLU_RS05780	0.90	-0.6
1,304,421	-		PFLU_RS05780	0.90	-2.5
1,304,486	+				-0.8
1,304,486	+				-2.8
1,304,486	+				-0.3
1,304,486	+				+0.1
1,304,486	+				-0.3
1,304,486	+				+0.8
1,304,486	+				-1.4
1,304,486	+				-0.2
1,304,486	+				-0.6
1,304,486	+				-0.7
1,304,486	+				-0.1
1,304,486	+				-1.9
1,304,486	+				+0.1
1,304,486	+				-1.3
1,304,487	-				+0.1
1,304,487	-				-0.7
1,304,487	-				-0.4
1,304,487	-				-1.0
1,304,487	-				-0.4
1,304,487	-				-1.3
1,304,487	-				-0.1
1,304,487	-				+0.9
1,304,487	-				-1.1
1,304,487	-				-1.9
1,304,487	-				-0.0
1,304,487	-				-2.0
1,304,508	+				-1.4
1,304,509	-				-3.1
1,304,509	-				+1.1
1,304,509	-				+1.2
1,304,637	-		PFLU_RS31425	0.54	+0.6
1,304,645	-		PFLU_RS31425	0.57	-0.5
1,304,645	-		PFLU_RS31425	0.57	-1.6
1,304,645	-		PFLU_RS31425	0.57	+0.4
1,304,645	-		PFLU_RS31425	0.57	-0.3
1,304,645	-		PFLU_RS31425	0.57	+1.1
1,304,645	-		PFLU_RS31425	0.57	+0.1
1,304,800	+				-1.7
1,304,801	-				+0.3
1,304,801	-				+0.6
1,304,801	-				+0.4
1,304,801	-				-1.2
1,304,882	+				-0.9
1,304,882	+				-0.7
1,304,882	+				+0.3
1,304,950	-				-0.1
1,304,986	+				-1.1
1,304,987	-				-2.8
1,305,024	+				-3.1
1,305,024	+				-4.6
1,305,024	+				-4.6
1,305,024	+				-3.3
1,305,024	+				-3.2
1,305,024	+				-2.7
1,305,025	-				+0.7
1,305,025	-				-0.7
1,305,025	-				+0.3
1,305,025	-				+0.6
1,305,028	+				-2.4
1,305,028	+				-4.3
1,305,028	+				-3.5
1,305,028	+				-3.3
1,305,028	+				-2.0
1,305,028	+				-4.3
1,305,028	+				-1.9
1,305,028	+				-3.0
1,305,028	+				-3.7
1,305,028	+				-2.5
1,305,028	+				-3.9
1,305,028	+				-1.5
1,305,028	+				-2.7
1,305,028	+				-3.9
1,305,028	+				-1.6
1,305,028	+				-1.5
1,305,029	-				-0.0
1,305,029	-				+0.1
1,305,029	-				+0.8
1,305,029	-				+1.4
1,305,029	-				+0.3
1,305,029	-				+0.6
1,305,029	-				+0.1
1,305,029	-				-1.0
1,305,029	-				-0.2
1,305,029	-				+0.5
1,305,029	-				+0.7
1,305,029	-				+0.2
1,305,141	+		PFLU_RS05785	0.15	+0.9
1,305,142	-		PFLU_RS05785	0.15	-0.6
1,305,142	-		PFLU_RS05785	0.15	+0.5
1,305,281	+		PFLU_RS05785	0.56	-1.2
1,305,365	+		PFLU_RS05785	0.80	-0.7
1,305,365	+		PFLU_RS05785	0.80	+0.5
1,305,365	+		PFLU_RS05785	0.80	+0.5
1,305,366	-		PFLU_RS05785	0.80	-0.3
1,305,366	-		PFLU_RS05785	0.80	+0.6
1,305,366	-		PFLU_RS05785	0.80	+0.4