Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04520

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
1,010,827	+				+1.0
1,010,827	+				+2.0
1,010,827	+				-0.8
1,010,828	-				-2.2
1,010,828	-				-2.6
1,010,828	-				-1.3
1,010,828	-				+0.3
1,010,828	-				-2.4
1,010,864	+				+1.5
1,010,864	+				+0.9
1,010,864	+				-1.0
1,010,864	+				+1.7
1,010,864	+				+1.3
1,010,864	+				+0.3
1,010,865	-				-0.9
1,010,865	-				+2.4
1,010,865	-				-0.3
1,010,865	-				+0.6
1,010,933	+				-1.9
1,010,933	+				+0.8
1,010,934	-				-0.0
1,010,934	-				-0.8
1,010,980	+				-0.2
1,010,980	+				+0.2
1,010,981	-				+0.4
1,010,981	-				+1.8
1,010,981	-				-0.7
1,010,981	-				-0.5
1,010,981	-				-0.4
1,010,994	+				-0.2
1,010,994	+				-0.7
1,010,994	+				-0.2
1,010,995	-				-2.0
1,010,995	-				-0.1
1,010,995	-				-0.1
1,011,106	-		PFLU_RS31405	0.14	-1.0
1,011,266	+		PFLU_RS31405	0.64	+0.8
1,011,267	-		PFLU_RS31405	0.64	+1.2
1,011,269	+		PFLU_RS31405	0.65	+0.3
1,011,269	+		PFLU_RS31405	0.65	-1.9
1,011,270	-		PFLU_RS31405	0.65	-0.2
1,011,270	-		PFLU_RS31405	0.65	+0.2
1,011,315	+		PFLU_RS31405	0.79	+1.0
1,011,315	+		PFLU_RS31405	0.79	-0.2
1,011,315	+		PFLU_RS31405	0.79	-0.6
1,011,315	+		PFLU_RS31405	0.79	+0.2
1,011,315	+		PFLU_RS31405	0.79	+1.5
1,011,315	+		PFLU_RS31405	0.79	+0.8
1,011,315	+		PFLU_RS31405	0.79	+0.4
1,011,315	+		PFLU_RS31405	0.79	-0.8
1,011,315	+		PFLU_RS31405	0.79	+0.4
1,011,316	-		PFLU_RS31405	0.80	-0.9
1,011,316	-		PFLU_RS31405	0.80	+1.2
1,011,316	-		PFLU_RS31405	0.80	+0.0
1,011,316	-		PFLU_RS31405	0.80	+0.4
1,011,316	-		PFLU_RS31405	0.80	+0.8
1,011,317	+		PFLU_RS31405	0.80	+0.8
1,011,317	+		PFLU_RS31405	0.80	+0.9
1,011,318	-		PFLU_RS31405	0.80	-0.9
1,011,318	-		PFLU_RS31405	0.80	-0.7
1,011,318	-		PFLU_RS31405	0.80	-2.1
1,011,318	-		PFLU_RS31405	0.80	-1.1
1,011,335	-		PFLU_RS31405	0.86	+1.2
1,011,335	-		PFLU_RS31405	0.86	-0.5
1,011,366	+				+0.9
1,011,366	+				+1.2
1,011,367	-				-0.5
1,011,367	-				-0.0
1,011,375	+				+0.4
1,011,375	+				-1.2
1,011,512	+		PFLU_RS04515	0.53	+1.0
1,011,512	+		PFLU_RS04515	0.53	+0.4
1,011,512	+		PFLU_RS04515	0.53	-0.3
1,011,512	+		PFLU_RS04515	0.53	+0.4
1,011,513	-		PFLU_RS04515	0.53	+0.5
1,011,513	-		PFLU_RS04515	0.53	-1.3
1,011,513	-		PFLU_RS04515	0.53	-0.2
1,011,513	-		PFLU_RS04515	0.53	+0.2
1,011,513	-		PFLU_RS04515	0.53	-1.1
1,011,513	-		PFLU_RS04515	0.53	+0.7
1,011,513	-		PFLU_RS04515	0.53	+0.9
1,011,513	-		PFLU_RS04515	0.53	-0.1
1,011,573	+		PFLU_RS04515	0.79	+1.0
1,011,573	+		PFLU_RS04515	0.79	-2.0
1,011,574	-		PFLU_RS04515	0.79	-0.2
1,011,574	-		PFLU_RS04515	0.79	+0.6
1,011,681	+				-1.1
1,011,682	-				-1.4
1,011,682	-				-1.2
1,011,695	+				-0.0
1,011,695	+				+1.4
1,011,695	+				+0.8
1,011,695	+				+1.0
1,011,695	+				+1.9
1,011,695	+				+0.2
1,011,695	+				+0.0
1,011,695	+				+0.0
1,011,695	+				+0.2
1,011,695	+				+0.4
1,011,695	+				-0.4
1,011,695	+				-0.7
1,011,696	-				+1.1
1,011,696	-				-0.5
1,011,696	-				+0.2
1,011,696	-				-0.1
1,011,696	-				+0.2
1,011,696	-				-0.2
1,011,696	-				-0.1
1,011,696	-				+0.9
1,011,696	-				-2.4
1,011,696	-				+0.6
1,011,696	-				+0.6
1,011,716	-				+0.4
1,011,740	+				-2.0
1,011,740	+				+0.1
1,011,740	+				-1.0
1,011,740	+				+1.0
1,011,740	+				+0.1
1,011,741	-				+0.3
1,011,741	-				-1.2
1,011,741	-				+0.2
1,011,741	-				-0.6
1,011,741	-				-0.6
1,011,741	-				+0.4
1,011,741	-				+1.0
1,011,741	-				+0.0
1,011,741	-				-1.0
1,011,741	-				-1.5
1,011,751	-				-0.2
1,011,775	-				-0.7
1,011,776	+				-0.3
1,011,776	+				-1.1
1,011,776	+				+0.7
1,011,776	+				-0.1
1,011,776	+				-1.1
1,011,776	+				+2.0
1,011,777	-				-1.1
1,011,777	-				+0.7
1,011,777	-				-0.2
1,012,052	+		PFLU_RS04520	0.40	-2.0
1,012,052	+		PFLU_RS04520	0.40	-0.7
1,012,053	-		PFLU_RS04520	0.40	-0.2
1,012,053	-		PFLU_RS04520	0.40	+0.5
1,012,166	-		PFLU_RS04520	0.59	-0.2
1,012,166	-		PFLU_RS04520	0.59	+0.0
1,012,189	+		PFLU_RS04520	0.63	+0.5
1,012,189	+		PFLU_RS04520	0.63	-2.0
1,012,189	+		PFLU_RS04520	0.63	-0.6
1,012,189	+		PFLU_RS04520	0.63	+0.3
1,012,189	+		PFLU_RS04520	0.63	-0.3
1,012,189	+		PFLU_RS04520	0.63	+0.4
1,012,189	+		PFLU_RS04520	0.63	+0.1
1,012,189	+		PFLU_RS04520	0.63	+0.3
1,012,189	+		PFLU_RS04520	0.63	-0.2
1,012,189	+		PFLU_RS04520	0.63	-0.6
1,012,190	-		PFLU_RS04520	0.63	+0.2
1,012,190	-		PFLU_RS04520	0.63	+0.2
1,012,190	-		PFLU_RS04520	0.63	-0.1
1,012,190	-		PFLU_RS04520	0.63	-0.4
1,012,293	+		PFLU_RS04520	0.81	+1.9
1,012,294	-		PFLU_RS04520	0.81	-0.7
1,012,294	-		PFLU_RS04520	0.81	-0.8
1,012,481	-				+0.2
1,012,560	+		PFLU_RS04525	0.46	+1.4
1,012,560	+		PFLU_RS04525	0.46	-0.1
1,012,560	+		PFLU_RS04525	0.46	-0.1
1,012,560	+		PFLU_RS04525	0.46	-0.4
1,012,560	+		PFLU_RS04525	0.46	-0.2
1,012,560	+		PFLU_RS04525	0.46	-0.6
1,012,560	+		PFLU_RS04525	0.46	-0.2
1,012,560	+		PFLU_RS04525	0.46	+0.7
1,012,561	-		PFLU_RS04525	0.47	+0.0
1,012,561	-		PFLU_RS04525	0.47	+1.1
1,012,561	-		PFLU_RS04525	0.47	+0.5
1,012,561	-		PFLU_RS04525	0.47	-0.8
1,012,561	-		PFLU_RS04525	0.47	-0.2
1,012,641	+		PFLU_RS04525	0.85	-0.3
1,012,641	+		PFLU_RS04525	0.85	+0.8
1,012,641	+		PFLU_RS04525	0.85	+2.1
1,012,683	+				-0.6
1,012,684	-				+1.0
1,012,714	+				-0.2
1,012,738	+				+0.5
1,012,739	-				+1.3
1,012,739	-				-0.7
1,012,739	-				-0.4
1,012,739	-				-0.8
1,012,750	+				+1.0
1,012,750	+				+0.5
1,012,750	+				+1.2
1,012,750	+				+1.1
1,012,751	-				-0.4
1,012,751	-				+1.1
1,012,751	-				+0.9
1,012,751	-				+1.1
1,012,751	-				+0.9
1,012,751	-				+0.8
1,012,751	-				+1.1
1,012,751	-				+1.0
1,012,815	-				-0.2
1,012,826	+				+1.0
1,012,872	-				+0.3
1,012,872	-				+0.6
1,012,878	+				+0.3
1,012,878	+				-2.0
1,012,878	+				-0.3
1,012,879	-				-1.7
1,012,879	-				+0.2
1,012,879	-				-0.4
1,012,892	+		PFLU_RS04530	0.14	+0.1
1,012,892	+		PFLU_RS04530	0.14	+0.3
1,012,893	-		PFLU_RS04530	0.15	+0.5
1,013,122	-				-2.0
1,013,172	+				-1.6
1,013,172	+				+1.0
1,013,172	+				+0.6
1,013,172	+				-0.9
1,013,172	+				+0.8
1,013,172	+				-0.2
1,013,233	+				+0.7
1,013,234	-				-0.6