Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS01145

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01140 and PFLU_RS01145 are separated by 256 nucleotidesPFLU_RS01145 and PFLU_RS01150 overlap by 4 nucleotides PFLU_RS01140: PFLU_RS01140 - AAA family ATPase, at 249,642 to 250,802 _RS01140 PFLU_RS01145: PFLU_RS01145 - efflux RND transporter periplasmic adaptor subunit, at 251,059 to 252,141 _RS01145 PFLU_RS01150: PFLU_RS01150 - efflux RND transporter periplasmic adaptor subunit, at 252,138 to 253,208 _RS01150 Position (kb) 251 252 253Strain fitness (log2 ratio) -2 -1 0 1 2at 250.176 kb on + strand, within PFLU_RS01140at 250.210 kb on + strand, within PFLU_RS01140at 250.211 kb on - strand, within PFLU_RS01140at 250.297 kb on + strand, within PFLU_RS01140at 250.297 kb on + strand, within PFLU_RS01140at 250.297 kb on + strand, within PFLU_RS01140at 250.298 kb on - strand, within PFLU_RS01140at 250.298 kb on - strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.320 kb on + strand, within PFLU_RS01140at 250.321 kb on - strand, within PFLU_RS01140at 250.321 kb on - strand, within PFLU_RS01140at 250.321 kb on - strand, within PFLU_RS01140at 250.321 kb on - strand, within PFLU_RS01140at 250.321 kb on - strand, within PFLU_RS01140at 250.321 kb on - strand, within PFLU_RS01140at 250.321 kb on - strand, within PFLU_RS01140at 250.321 kb on - strand, within PFLU_RS01140at 250.393 kb on + strand, within PFLU_RS01140at 250.575 kb on - strand, within PFLU_RS01140at 250.575 kb on - strand, within PFLU_RS01140at 250.775 kb on - strandat 250.811 kb on + strandat 250.811 kb on + strandat 250.811 kb on + strandat 250.811 kb on + strandat 250.811 kb on + strandat 250.811 kb on + strandat 250.811 kb on + strandat 250.812 kb on - strandat 250.812 kb on - strandat 250.812 kb on - strandat 250.812 kb on - strandat 250.812 kb on - strandat 250.812 kb on - strandat 250.817 kb on + strandat 250.818 kb on - strandat 250.818 kb on - strandat 250.818 kb on - strandat 250.868 kb on + strandat 250.868 kb on + strandat 250.868 kb on + strandat 250.869 kb on - strandat 250.936 kb on + strandat 251.004 kb on + strandat 251.004 kb on + strandat 251.004 kb on + strandat 251.004 kb on + strandat 251.004 kb on + strandat 251.005 kb on - strandat 251.020 kb on + strandat 251.021 kb on - strandat 251.070 kb on + strandat 251.071 kb on - strandat 251.082 kb on + strandat 251.082 kb on + strandat 251.082 kb on + strandat 251.082 kb on + strandat 251.083 kb on - strandat 251.083 kb on - strandat 251.083 kb on - strandat 251.083 kb on - strandat 251.083 kb on - strandat 251.083 kb on - strandat 251.083 kb on - strandat 251.099 kb on + strandat 251.099 kb on + strandat 251.449 kb on + strand, within PFLU_RS01145at 251.467 kb on + strand, within PFLU_RS01145at 251.557 kb on + strand, within PFLU_RS01145at 251.557 kb on + strand, within PFLU_RS01145at 251.559 kb on + strand, within PFLU_RS01145at 251.560 kb on - strand, within PFLU_RS01145at 251.560 kb on - strand, within PFLU_RS01145at 251.690 kb on - strand, within PFLU_RS01145at 251.690 kb on - strand, within PFLU_RS01145at 251.690 kb on - strand, within PFLU_RS01145at 251.690 kb on - strand, within PFLU_RS01145at 251.690 kb on - strand, within PFLU_RS01145at 251.777 kb on + strand, within PFLU_RS01145at 251.778 kb on - strand, within PFLU_RS01145at 252.157 kb on + strandat 252.157 kb on + strandat 252.158 kb on - strandat 252.158 kb on - strandat 252.176 kb on - strandat 252.229 kb on + strandat 252.305 kb on + strand, within PFLU_RS01150at 252.305 kb on + strand, within PFLU_RS01150at 252.462 kb on + strand, within PFLU_RS01150at 252.462 kb on + strand, within PFLU_RS01150at 252.462 kb on + strand, within PFLU_RS01150at 252.462 kb on + strand, within PFLU_RS01150at 252.462 kb on + strand, within PFLU_RS01150at 252.463 kb on - strand, within PFLU_RS01150at 252.463 kb on - strand, within PFLU_RS01150at 252.463 kb on - strand, within PFLU_RS01150at 252.463 kb on - strand, within PFLU_RS01150at 252.624 kb on + strand, within PFLU_RS01150at 252.624 kb on + strand, within PFLU_RS01150at 252.624 kb on + strand, within PFLU_RS01150at 252.624 kb on + strand, within PFLU_RS01150at 252.624 kb on + strand, within PFLU_RS01150at 252.624 kb on + strand, within PFLU_RS01150at 252.625 kb on - strand, within PFLU_RS01150at 252.625 kb on - strand, within PFLU_RS01150at 253.026 kb on - strand, within PFLU_RS01150

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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250,176 + PFLU_RS01140 0.46 -1.1
250,210 + PFLU_RS01140 0.49 -1.6
250,211 - PFLU_RS01140 0.49 -0.6
250,297 + PFLU_RS01140 0.56 -0.7
250,297 + PFLU_RS01140 0.56 +2.5
250,297 + PFLU_RS01140 0.56 +0.1
250,298 - PFLU_RS01140 0.57 +0.2
250,298 - PFLU_RS01140 0.57 +0.5
250,320 + PFLU_RS01140 0.58 +0.0
250,320 + PFLU_RS01140 0.58 -2.0
250,320 + PFLU_RS01140 0.58 +0.9
250,320 + PFLU_RS01140 0.58 -0.1
250,320 + PFLU_RS01140 0.58 +1.9
250,320 + PFLU_RS01140 0.58 -0.2
250,320 + PFLU_RS01140 0.58 +1.3
250,320 + PFLU_RS01140 0.58 +0.3
250,320 + PFLU_RS01140 0.58 +0.2
250,320 + PFLU_RS01140 0.58 -0.2
250,320 + PFLU_RS01140 0.58 +0.4
250,320 + PFLU_RS01140 0.58 -0.2
250,320 + PFLU_RS01140 0.58 -0.2
250,321 - PFLU_RS01140 0.58 +1.6
250,321 - PFLU_RS01140 0.58 +1.1
250,321 - PFLU_RS01140 0.58 -2.3
250,321 - PFLU_RS01140 0.58 -1.6
250,321 - PFLU_RS01140 0.58 -0.4
250,321 - PFLU_RS01140 0.58 -1.0
250,321 - PFLU_RS01140 0.58 +0.7
250,321 - PFLU_RS01140 0.58 -2.1
250,393 + PFLU_RS01140 0.65 +1.0
250,575 - PFLU_RS01140 0.80 -0.3
250,575 - PFLU_RS01140 0.80 -1.4
250,775 - +0.6
250,811 + +1.0
250,811 + -1.9
250,811 + +0.2
250,811 + +1.9
250,811 + +1.9
250,811 + -1.2
250,811 + +0.7
250,812 - +0.6
250,812 - -0.2
250,812 - +1.1
250,812 - +0.0
250,812 - +0.3
250,812 - +0.1
250,817 + +1.2
250,818 - +0.9
250,818 - +0.3
250,818 - -0.0
250,868 + -0.8
250,868 + -0.8
250,868 + +0.8
250,869 - -2.2
250,936 + +0.0
251,004 + +0.7
251,004 + -0.9
251,004 + -0.4
251,004 + -0.7
251,004 + -0.9
251,005 - -0.3
251,020 + +1.0
251,021 - -0.3
251,070 + -2.2
251,071 - -0.7
251,082 + -0.5
251,082 + +0.5
251,082 + -0.7
251,082 + +1.5
251,083 - -1.1
251,083 - +0.7
251,083 - -1.2
251,083 - +1.3
251,083 - -0.5
251,083 - -1.9
251,083 - -0.5
251,099 + +1.0
251,099 + -0.3
251,449 + PFLU_RS01145 0.36 -0.0
251,467 + PFLU_RS01145 0.38 +1.6
251,557 + PFLU_RS01145 0.46 +0.4
251,557 + PFLU_RS01145 0.46 -0.1
251,559 + PFLU_RS01145 0.46 +0.9
251,560 - PFLU_RS01145 0.46 +0.1
251,560 - PFLU_RS01145 0.46 +0.5
251,690 - PFLU_RS01145 0.58 +0.9
251,690 - PFLU_RS01145 0.58 +0.6
251,690 - PFLU_RS01145 0.58 +0.7
251,690 - PFLU_RS01145 0.58 +0.1
251,690 - PFLU_RS01145 0.58 -0.5
251,777 + PFLU_RS01145 0.66 -1.5
251,778 - PFLU_RS01145 0.66 -1.1
252,157 + -0.0
252,157 + +0.2
252,158 - +1.3
252,158 - +2.5
252,176 - -0.6
252,229 + -1.0
252,305 + PFLU_RS01150 0.16 +0.2
252,305 + PFLU_RS01150 0.16 +0.3
252,462 + PFLU_RS01150 0.30 +1.9
252,462 + PFLU_RS01150 0.30 +1.2
252,462 + PFLU_RS01150 0.30 +0.1
252,462 + PFLU_RS01150 0.30 -1.7
252,462 + PFLU_RS01150 0.30 -2.2
252,463 - PFLU_RS01150 0.30 +0.6
252,463 - PFLU_RS01150 0.30 -2.3
252,463 - PFLU_RS01150 0.30 -1.4
252,463 - PFLU_RS01150 0.30 +0.4
252,624 + PFLU_RS01150 0.45 +0.9
252,624 + PFLU_RS01150 0.45 -0.7
252,624 + PFLU_RS01150 0.45 +0.3
252,624 + PFLU_RS01150 0.45 -0.0
252,624 + PFLU_RS01150 0.45 +0.4
252,624 + PFLU_RS01150 0.45 +0.3
252,625 - PFLU_RS01150 0.45 -1.0
252,625 - PFLU_RS01150 0.45 +0.6
253,026 - PFLU_RS01150 0.83 +0.1

Or see this region's nucleotide sequence