Strain Fitness in Pseudomonas sp. S08-1 around OH686_21765

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21750 and OH686_21765 overlap by 4 nucleotidesOH686_21765 and OH686_21770 are separated by 79 nucleotidesOH686_21770 and OH686_21775 are separated by 253 nucleotides OH686_21750: OH686_21750 - hypothetical protein, at 4,425,758 to 4,434,151 _21750 OH686_21765: OH686_21765 - hypothetical protein, at 4,434,148 to 4,434,369 _21765 OH686_21770: OH686_21770 - hypothetical protein, at 4,434,449 to 4,434,922 _21770 OH686_21775: OH686_21775 - Phage integrase, at 4,435,176 to 4,436,486 _21775 Position (kb) 4434 4435Strain fitness (log2 ratio) -2 -1 0 1at 4433.156 kb on + strand, within OH686_21750at 4433.156 kb on + strand, within OH686_21750at 4433.156 kb on + strand, within OH686_21750at 4433.156 kb on + strand, within OH686_21750at 4433.156 kb on + strand, within OH686_21750at 4433.156 kb on + strand, within OH686_21750at 4433.156 kb on + strand, within OH686_21750at 4433.157 kb on - strand, within OH686_21750at 4433.157 kb on - strand, within OH686_21750at 4433.157 kb on - strand, within OH686_21750at 4433.157 kb on - strand, within OH686_21750at 4433.157 kb on - strand, within OH686_21750at 4433.157 kb on - strand, within OH686_21750at 4433.225 kb on + strand, within OH686_21750at 4433.225 kb on + strand, within OH686_21750at 4433.225 kb on + strand, within OH686_21750at 4433.225 kb on + strand, within OH686_21750at 4433.225 kb on + strand, within OH686_21750at 4433.225 kb on + strand, within OH686_21750at 4433.225 kb on + strand, within OH686_21750at 4433.225 kb on + strand, within OH686_21750at 4433.226 kb on - strand, within OH686_21750at 4433.226 kb on - strand, within OH686_21750at 4433.226 kb on - strand, within OH686_21750at 4433.226 kb on - strand, within OH686_21750at 4433.501 kb on + strandat 4433.501 kb on + strandat 4433.501 kb on + strandat 4433.501 kb on + strandat 4433.502 kb on - strandat 4433.563 kb on + strandat 4433.598 kb on - strandat 4433.598 kb on - strandat 4433.598 kb on - strandat 4433.696 kb on + strandat 4433.696 kb on + strandat 4433.696 kb on + strandat 4433.696 kb on + strandat 4433.697 kb on - strandat 4433.717 kb on + strandat 4433.717 kb on + strandat 4433.718 kb on - strandat 4433.813 kb on + strandat 4433.813 kb on + strandat 4433.813 kb on + strandat 4433.813 kb on + strandat 4433.814 kb on - strandat 4433.814 kb on - strandat 4433.814 kb on - strandat 4433.814 kb on - strandat 4433.814 kb on - strandat 4433.814 kb on - strandat 4433.814 kb on - strandat 4433.814 kb on - strandat 4433.843 kb on + strandat 4433.843 kb on + strandat 4433.844 kb on - strandat 4433.844 kb on - strandat 4433.844 kb on - strandat 4433.844 kb on - strandat 4433.844 kb on - strandat 4434.038 kb on + strandat 4434.039 kb on - strandat 4434.149 kb on + strandat 4434.149 kb on + strandat 4434.150 kb on - strandat 4434.150 kb on - strandat 4434.150 kb on - strandat 4434.150 kb on - strandat 4434.150 kb on - strandat 4434.150 kb on - strandat 4434.263 kb on + strand, within OH686_21765at 4434.263 kb on + strand, within OH686_21765at 4434.263 kb on + strand, within OH686_21765at 4434.263 kb on + strand, within OH686_21765at 4434.263 kb on + strand, within OH686_21765at 4434.263 kb on + strand, within OH686_21765at 4434.263 kb on + strand, within OH686_21765at 4434.263 kb on + strand, within OH686_21765at 4434.263 kb on + strand, within OH686_21765at 4434.263 kb on + strand, within OH686_21765at 4434.263 kb on + strand, within OH686_21765at 4434.264 kb on - strand, within OH686_21765at 4434.264 kb on - strand, within OH686_21765at 4434.264 kb on - strand, within OH686_21765at 4434.264 kb on - strand, within OH686_21765at 4434.264 kb on - strand, within OH686_21765at 4434.264 kb on - strand, within OH686_21765at 4434.264 kb on - strand, within OH686_21765at 4434.264 kb on - strand, within OH686_21765at 4434.356 kb on + strandat 4434.356 kb on + strandat 4434.356 kb on + strandat 4434.356 kb on + strandat 4434.356 kb on + strandat 4434.356 kb on + strandat 4434.357 kb on - strandat 4434.357 kb on - strandat 4434.357 kb on - strandat 4434.357 kb on - strandat 4434.357 kb on - strandat 4434.357 kb on - strandat 4434.357 kb on - strandat 4434.381 kb on + strandat 4434.381 kb on + strandat 4434.382 kb on - strandat 4434.382 kb on - strandat 4434.382 kb on - strandat 4434.384 kb on + strandat 4434.384 kb on + strandat 4434.384 kb on + strandat 4434.384 kb on + strandat 4434.385 kb on - strandat 4434.385 kb on - strandat 4434.445 kb on - strandat 4434.445 kb on - strandat 4434.457 kb on - strandat 4434.502 kb on - strand, within OH686_21770at 4434.502 kb on - strand, within OH686_21770at 4434.544 kb on + strand, within OH686_21770at 4434.545 kb on - strand, within OH686_21770at 4434.561 kb on + strand, within OH686_21770at 4434.685 kb on - strand, within OH686_21770at 4434.733 kb on + strand, within OH686_21770at 4434.766 kb on - strand, within OH686_21770at 4434.802 kb on + strand, within OH686_21770at 4434.802 kb on + strand, within OH686_21770at 4434.802 kb on + strand, within OH686_21770at 4434.803 kb on - strand, within OH686_21770at 4434.804 kb on + strand, within OH686_21770at 4434.804 kb on + strand, within OH686_21770at 4434.805 kb on - strand, within OH686_21770at 4434.805 kb on - strand, within OH686_21770at 4434.806 kb on + strand, within OH686_21770at 4434.806 kb on + strand, within OH686_21770at 4434.806 kb on + strand, within OH686_21770at 4434.806 kb on + strand, within OH686_21770at 4434.806 kb on + strand, within OH686_21770at 4434.806 kb on + strand, within OH686_21770at 4434.806 kb on + strand, within OH686_21770at 4434.806 kb on + strand, within OH686_21770at 4434.806 kb on + strand, within OH686_21770at 4434.806 kb on + strand, within OH686_21770at 4434.806 kb on + strand, within OH686_21770at 4434.806 kb on + strand, within OH686_21770at 4434.807 kb on - strand, within OH686_21770at 4434.807 kb on - strand, within OH686_21770at 4434.807 kb on - strand, within OH686_21770at 4434.807 kb on - strand, within OH686_21770at 4434.807 kb on - strand, within OH686_21770at 4434.833 kb on + strand, within OH686_21770at 4434.834 kb on - strand, within OH686_21770at 4434.834 kb on - strand, within OH686_21770at 4434.884 kb on + strandat 4434.884 kb on + strandat 4434.885 kb on - strandat 4434.895 kb on + strandat 4434.896 kb on - strandat 4434.909 kb on + strandat 4434.909 kb on + strandat 4434.910 kb on - strandat 4434.927 kb on - strandat 4434.978 kb on - strandat 4434.991 kb on + strandat 4435.113 kb on - strandat 4435.113 kb on - strandat 4435.141 kb on + strandat 4435.144 kb on - strandat 4435.144 kb on - strandat 4435.203 kb on + strandat 4435.203 kb on + strandat 4435.204 kb on - strandat 4435.243 kb on + strandat 4435.291 kb on + strandat 4435.291 kb on + strandat 4435.323 kb on + strand, within OH686_21775at 4435.324 kb on - strand, within OH686_21775

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,433,156 + OH686_21750 0.88 -0.3
4,433,156 + OH686_21750 0.88 -0.1
4,433,156 + OH686_21750 0.88 -1.0
4,433,156 + OH686_21750 0.88 +0.1
4,433,156 + OH686_21750 0.88 -0.6
4,433,156 + OH686_21750 0.88 -1.1
4,433,156 + OH686_21750 0.88 +0.8
4,433,157 - OH686_21750 0.88 +0.1
4,433,157 - OH686_21750 0.88 -0.2
4,433,157 - OH686_21750 0.88 -1.6
4,433,157 - OH686_21750 0.88 +0.9
4,433,157 - OH686_21750 0.88 +0.8
4,433,157 - OH686_21750 0.88 +0.3
4,433,225 + OH686_21750 0.89 +0.0
4,433,225 + OH686_21750 0.89 +1.5
4,433,225 + OH686_21750 0.89 +0.5
4,433,225 + OH686_21750 0.89 -0.3
4,433,225 + OH686_21750 0.89 -0.4
4,433,225 + OH686_21750 0.89 +0.4
4,433,225 + OH686_21750 0.89 -0.1
4,433,225 + OH686_21750 0.89 -0.1
4,433,226 - OH686_21750 0.89 -0.6
4,433,226 - OH686_21750 0.89 +0.3
4,433,226 - OH686_21750 0.89 -0.5
4,433,226 - OH686_21750 0.89 +0.2
4,433,501 + +0.2
4,433,501 + -0.8
4,433,501 + -0.5
4,433,501 + -0.2
4,433,502 - +0.9
4,433,563 + -0.6
4,433,598 - +0.9
4,433,598 - -0.3
4,433,598 - -0.2
4,433,696 + -1.3
4,433,696 + +0.3
4,433,696 + -2.2
4,433,696 + -0.3
4,433,697 - -0.1
4,433,717 + +0.3
4,433,717 + +0.2
4,433,718 - -1.3
4,433,813 + +0.8
4,433,813 + -0.2
4,433,813 + -0.7
4,433,813 + -0.5
4,433,814 - -1.2
4,433,814 - -0.3
4,433,814 - -1.6
4,433,814 - -0.7
4,433,814 - -0.7
4,433,814 - -0.2
4,433,814 - +1.2
4,433,814 - +0.3
4,433,843 + +0.3
4,433,843 + +0.2
4,433,844 - -0.6
4,433,844 - +0.1
4,433,844 - +0.1
4,433,844 - -0.9
4,433,844 - +0.3
4,434,038 + +0.2
4,434,039 - -0.7
4,434,149 + -0.5
4,434,149 + +1.7
4,434,150 - -0.1
4,434,150 - -0.2
4,434,150 - -0.4
4,434,150 - -0.3
4,434,150 - +1.2
4,434,150 - +0.3
4,434,263 + OH686_21765 0.52 -0.1
4,434,263 + OH686_21765 0.52 -0.0
4,434,263 + OH686_21765 0.52 -0.3
4,434,263 + OH686_21765 0.52 -0.3
4,434,263 + OH686_21765 0.52 +0.3
4,434,263 + OH686_21765 0.52 +0.1
4,434,263 + OH686_21765 0.52 +0.6
4,434,263 + OH686_21765 0.52 +0.1
4,434,263 + OH686_21765 0.52 -0.1
4,434,263 + OH686_21765 0.52 -0.0
4,434,263 + OH686_21765 0.52 -0.8
4,434,264 - OH686_21765 0.52 -0.1
4,434,264 - OH686_21765 0.52 +0.2
4,434,264 - OH686_21765 0.52 +0.0
4,434,264 - OH686_21765 0.52 -0.7
4,434,264 - OH686_21765 0.52 -0.4
4,434,264 - OH686_21765 0.52 -0.5
4,434,264 - OH686_21765 0.52 -0.3
4,434,264 - OH686_21765 0.52 -0.4
4,434,356 + -0.6
4,434,356 + -0.5
4,434,356 + +0.6
4,434,356 + +0.1
4,434,356 + -0.3
4,434,356 + +0.3
4,434,357 - +0.4
4,434,357 - -0.1
4,434,357 - -0.9
4,434,357 - +0.9
4,434,357 - +0.8
4,434,357 - -0.5
4,434,357 - -0.1
4,434,381 + -0.7
4,434,381 + -0.1
4,434,382 - +0.7
4,434,382 - -0.1
4,434,382 - -0.1
4,434,384 + +0.8
4,434,384 + -0.1
4,434,384 + +0.8
4,434,384 + +0.5
4,434,385 - -0.2
4,434,385 - -0.2
4,434,445 - +0.5
4,434,445 - -1.0
4,434,457 - -1.0
4,434,502 - OH686_21770 0.11 +0.1
4,434,502 - OH686_21770 0.11 +0.1
4,434,544 + OH686_21770 0.20 +0.5
4,434,545 - OH686_21770 0.20 -0.2
4,434,561 + OH686_21770 0.24 -0.1
4,434,685 - OH686_21770 0.50 +0.3
4,434,733 + OH686_21770 0.60 -0.1
4,434,766 - OH686_21770 0.67 -0.5
4,434,802 + OH686_21770 0.74 -0.1
4,434,802 + OH686_21770 0.74 -0.0
4,434,802 + OH686_21770 0.74 +0.6
4,434,803 - OH686_21770 0.75 -0.6
4,434,804 + OH686_21770 0.75 +0.3
4,434,804 + OH686_21770 0.75 -0.7
4,434,805 - OH686_21770 0.75 +1.0
4,434,805 - OH686_21770 0.75 +0.6
4,434,806 + OH686_21770 0.75 +1.1
4,434,806 + OH686_21770 0.75 +0.8
4,434,806 + OH686_21770 0.75 -0.2
4,434,806 + OH686_21770 0.75 -0.8
4,434,806 + OH686_21770 0.75 -1.2
4,434,806 + OH686_21770 0.75 +0.7
4,434,806 + OH686_21770 0.75 +0.0
4,434,806 + OH686_21770 0.75 -0.0
4,434,806 + OH686_21770 0.75 -0.8
4,434,806 + OH686_21770 0.75 +0.0
4,434,806 + OH686_21770 0.75 +0.0
4,434,806 + OH686_21770 0.75 +0.3
4,434,807 - OH686_21770 0.76 +0.4
4,434,807 - OH686_21770 0.76 +0.7
4,434,807 - OH686_21770 0.76 -0.2
4,434,807 - OH686_21770 0.76 -0.2
4,434,807 - OH686_21770 0.76 +1.2
4,434,833 + OH686_21770 0.81 +0.1
4,434,834 - OH686_21770 0.81 -0.1
4,434,834 - OH686_21770 0.81 +0.7
4,434,884 + -0.6
4,434,884 + -0.8
4,434,885 - +0.3
4,434,895 + +0.5
4,434,896 - +0.3
4,434,909 + +0.3
4,434,909 + -0.6
4,434,910 - +0.2
4,434,927 - -1.1
4,434,978 - -1.1
4,434,991 + -0.5
4,435,113 - -0.1
4,435,113 - -0.6
4,435,141 + +0.4
4,435,144 - -0.5
4,435,144 - -0.0
4,435,203 + +0.0
4,435,203 + -0.1
4,435,204 - -0.3
4,435,243 + -0.9
4,435,291 + +0.4
4,435,291 + +0.3
4,435,323 + OH686_21775 0.11 -0.0
4,435,324 - OH686_21775 0.11 -1.7

Or see this region's nucleotide sequence