Strain Fitness in Pseudomonas sp. S08-1 around OH686_08780

Experiment: D,L-Malic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C)
1,787,301	+		OH686_08770	0.57	-0.7
1,787,301	+		OH686_08770	0.57	-0.5
1,787,301	+		OH686_08770	0.57	-0.3
1,787,302	-		OH686_08770	0.57	+0.5
1,787,302	-		OH686_08770	0.57	+0.5
1,787,302	-		OH686_08770	0.57	-0.5
1,787,302	-		OH686_08770	0.57	+0.5
1,787,673	+		OH686_08775	0.18	+0.5
1,787,843	-		OH686_08775	0.54	-0.9
1,787,844	+		OH686_08775	0.54	+0.7
1,787,844	+		OH686_08775	0.54	-0.2
1,787,844	+		OH686_08775	0.54	-0.0
1,787,844	+		OH686_08775	0.54	+0.3
1,787,844	+		OH686_08775	0.54	+0.0
1,787,844	+		OH686_08775	0.54	+0.5
1,787,844	+		OH686_08775	0.54	-0.5
1,787,844	+		OH686_08775	0.54	-0.3
1,787,844	+		OH686_08775	0.54	+1.2
1,787,844	+		OH686_08775	0.54	+0.5
1,787,844	+		OH686_08775	0.54	+0.8
1,787,844	+		OH686_08775	0.54	+1.0
1,787,844	+		OH686_08775	0.54	+0.6
1,787,845	-		OH686_08775	0.54	-0.5
1,787,845	-		OH686_08775	0.54	-0.5
1,787,845	-		OH686_08775	0.54	-0.5
1,787,845	-		OH686_08775	0.54	-0.1
1,787,845	-		OH686_08775	0.54	-0.4
1,787,845	-		OH686_08775	0.54	-0.1
1,787,845	-		OH686_08775	0.54	+0.0
1,787,845	-		OH686_08775	0.54	-1.4
1,787,845	-		OH686_08775	0.54	+1.1
1,787,845	-		OH686_08775	0.54	-0.0
1,787,845	-		OH686_08775	0.54	-0.6
1,787,845	-		OH686_08775	0.54	-0.3
1,787,845	-		OH686_08775	0.54	+0.7
1,787,928	+		OH686_08775	0.71	+0.8
1,787,928	+		OH686_08775	0.71	-0.4
1,787,928	+		OH686_08775	0.71	-0.3
1,787,929	-		OH686_08775	0.72	-0.2
1,787,929	-		OH686_08775	0.72	-0.4
1,787,929	-		OH686_08775	0.72	-1.6
1,787,945	+		OH686_08775	0.75	-1.0
1,787,945	+		OH686_08775	0.75	+1.7
1,787,945	+		OH686_08775	0.75	+1.1
1,787,946	-		OH686_08775	0.75	+0.3
1,787,946	-		OH686_08775	0.75	+0.8
1,787,946	-		OH686_08775	0.75	+0.7
1,787,946	-		OH686_08775	0.75	+0.9
1,787,946	-		OH686_08775	0.75	+0.9
1,787,986	-		OH686_08775	0.84	+0.0
1,788,021	+				-0.3
1,788,021	+				-0.8
1,788,021	+				-0.1
1,788,021	+				-0.9
1,788,021	+				+0.2
1,788,021	+				-0.2
1,788,021	+				-1.1
1,788,021	+				-0.4
1,788,021	+				-0.1
1,788,021	+				-0.7
1,788,021	+				+0.1
1,788,021	+				-0.5
1,788,021	+				-0.8
1,788,021	+				-0.3
1,788,022	-				-0.4
1,788,022	-				+0.8
1,788,022	-				+0.1
1,788,022	-				-0.7
1,788,022	-				+0.4
1,788,022	-				+0.5
1,788,022	-				+0.5
1,788,022	-				+0.9
1,788,022	-				+1.0
1,788,024	+				-0.2
1,788,024	+				-1.1
1,788,024	+				-0.3
1,788,024	+				-0.9
1,788,024	+				+0.1
1,788,025	-				-0.3
1,788,025	-				+0.7
1,788,025	-				-0.3
1,788,025	-				-0.3
1,788,025	-				-1.0
1,788,025	-				-0.3
1,788,025	-				-0.6
1,788,094	+				-0.3
1,788,094	+				-0.0
1,788,094	+				-1.1
1,788,094	+				+0.5
1,788,095	-				+0.8
1,788,095	-				+0.5
1,788,101	+				-0.4
1,788,101	+				-1.0
1,788,102	-				+0.3
1,788,102	-				+0.0
1,788,102	-				+0.2
1,788,156	-				+0.6
1,788,156	-				+0.3
1,788,156	-				-0.2
1,788,156	-				+0.6
1,788,156	-				+0.2
1,788,156	-				-0.7
1,788,156	-				+0.3
1,788,301	-		OH686_08780	0.19	+1.0
1,788,325	+		OH686_08780	0.22	-0.3
1,788,325	+		OH686_08780	0.22	-0.4
1,788,326	-		OH686_08780	0.22	-0.6
1,788,326	-		OH686_08780	0.22	-0.3
1,788,326	-		OH686_08780	0.22	-0.9
1,788,352	+		OH686_08780	0.26	+0.7
1,788,361	+		OH686_08780	0.28	-1.4
1,788,361	+		OH686_08780	0.28	-0.5
1,788,362	-		OH686_08780	0.28	+0.9
1,788,362	-		OH686_08780	0.28	+0.6
1,788,362	-		OH686_08780	0.28	+0.6
1,788,362	-		OH686_08780	0.28	-0.6
1,788,420	-		OH686_08780	0.36	-0.5
1,788,563	-		OH686_08780	0.57	+0.3
1,788,563	-		OH686_08780	0.57	-0.8
1,788,668	+		OH686_08780	0.73	+0.2
1,788,668	+		OH686_08780	0.73	-0.2
1,788,668	+		OH686_08780	0.73	+0.5
1,788,668	+		OH686_08780	0.73	+0.5
1,788,669	-		OH686_08780	0.73	+1.3
1,788,669	-		OH686_08780	0.73	+0.6
1,788,802	+				+2.0
1,788,802	+				+0.3
1,788,802	+				-0.3
1,788,802	+				-0.2
1,788,802	+				+2.4
1,788,802	+				-0.2
1,788,802	+				+0.1
1,788,802	+				+0.5
1,788,802	+				-1.7
1,788,802	+				-0.8
1,788,802	+				-0.0
1,788,802	+				-1.4
1,788,802	+				+1.2
1,788,802	+				-0.2
1,788,802	+				-0.1
1,788,803	-				-0.2
1,788,803	-				+0.3
1,788,803	-				+0.7
1,788,803	-				+0.6
1,788,803	-				+0.6
1,788,803	-				+0.4
1,788,803	-				-0.7
1,788,843	+				+0.2
1,788,843	+				+0.6
1,788,843	+				+0.2
1,788,843	+				+0.2
1,788,843	+				-0.1
1,788,843	+				-0.5
1,788,843	+				-0.2
1,788,843	+				+0.4
1,788,843	+				+0.2
1,788,844	-				-1.1
1,788,844	-				+0.2
1,788,844	-				-1.7
1,788,844	-				-0.1
1,788,844	-				-0.7
1,788,844	-				+0.5
1,788,844	-				+0.6
1,788,844	-				+0.4
1,788,844	-				+0.2
1,788,844	-				+0.5
1,788,844	-				+0.6
1,788,882	+				-0.1
1,788,882	+				+0.3
1,788,882	+				-0.3
1,788,883	-				-0.0
1,788,883	-				+0.2
1,788,883	-				+0.4
1,788,901	+				-0.4
1,788,901	+				-0.3
1,788,902	-				-0.3
1,788,902	-				+0.2
1,788,994	+		OH686_08785	0.17	-0.8
1,788,994	+		OH686_08785	0.17	+0.2
1,788,994	+		OH686_08785	0.17	-1.4
1,788,994	+		OH686_08785	0.17	+0.3
1,788,994	+		OH686_08785	0.17	-0.3
1,788,994	+		OH686_08785	0.17	-0.1
1,788,995	-		OH686_08785	0.17	+0.4
1,788,995	-		OH686_08785	0.17	-0.9
1,788,995	-		OH686_08785	0.17	-1.3
1,788,995	-		OH686_08785	0.17	+0.3
1,788,995	-		OH686_08785	0.17	-0.4
1,789,177	+		OH686_08785	0.59	-0.2
1,789,177	+		OH686_08785	0.59	-0.1
1,789,177	+		OH686_08785	0.59	-0.8
1,789,177	+		OH686_08785	0.59	+0.0
1,789,178	-		OH686_08785	0.60	-1.4
1,789,178	-		OH686_08785	0.60	+1.0
1,789,178	-		OH686_08785	0.60	-0.4
1,789,178	-		OH686_08785	0.60	-0.4
1,789,178	-		OH686_08785	0.60	+0.5
1,789,178	-		OH686_08785	0.60	+0.1
1,789,178	-		OH686_08785	0.60	-0.0
1,789,178	-		OH686_08785	0.60	+1.0
1,789,238	-		OH686_08785	0.73	+0.2
1,789,250	-		OH686_08785	0.76	-0.1
1,789,252	+		OH686_08785	0.77	+0.2
1,789,252	+		OH686_08785	0.77	-0.8
1,789,252	+		OH686_08785	0.77	+0.3
1,789,253	-		OH686_08785	0.77	+0.2
1,789,253	-		OH686_08785	0.77	-1.7
1,789,253	-		OH686_08785	0.77	-0.5
1,789,253	-		OH686_08785	0.77	-0.5
1,789,253	-		OH686_08785	0.77	+0.8
1,789,253	-		OH686_08785	0.77	+0.3
1,789,253	-		OH686_08785	0.77	-1.4
1,789,300	+		OH686_08785	0.88	+0.7
1,789,321	+				-0.3
1,789,322	-				-0.2
1,789,330	+				-0.2
1,789,330	+				-0.1
1,789,330	+				-0.3
1,789,330	+				-1.4
1,789,330	+				-0.4
1,789,330	+				-0.3
1,789,330	+				+0.7
1,789,330	+				+1.4
1,789,330	+				-0.8
1,789,331	-				-1.2
1,789,331	-				+0.7
1,789,331	-				+0.5
1,789,331	-				+0.4
1,789,331	-				-1.0
1,789,331	-				-0.0
1,789,331	-				-0.5
1,789,331	-				+1.2
1,789,331	-				+0.2
1,789,344	+				-0.1
1,789,345	-				-0.3
1,789,345	-				+1.0
1,789,384	-				+0.8
1,789,512	+		OH686_08790	0.16	-0.8
1,789,512	+		OH686_08790	0.16	-0.6
1,789,512	+		OH686_08790	0.16	-0.8
1,789,512	+		OH686_08790	0.16	+0.5
1,789,512	+		OH686_08790	0.16	-0.6
1,789,512	+		OH686_08790	0.16	+0.5
1,789,512	+		OH686_08790	0.16	+0.5
1,789,513	-		OH686_08790	0.16	-0.7
1,789,513	-		OH686_08790	0.16	-0.7
1,789,513	-		OH686_08790	0.16	-0.2
1,789,513	-		OH686_08790	0.16	-1.0
1,789,539	+		OH686_08790	0.19	+0.7
1,789,539	+		OH686_08790	0.19	-0.2
1,789,539	+		OH686_08790	0.19	+0.0
1,789,540	-		OH686_08790	0.20	+1.0
1,789,540	-		OH686_08790	0.20	+0.2
1,789,580	+		OH686_08790	0.25	-0.8
1,789,580	+		OH686_08790	0.25	-0.3
1,789,580	+		OH686_08790	0.25	-1.6
1,789,580	+		OH686_08790	0.25	+0.8
1,789,580	+		OH686_08790	0.25	-2.0
1,789,580	+		OH686_08790	0.25	-0.2
1,789,580	+		OH686_08790	0.25	+0.4
1,789,580	+		OH686_08790	0.25	+0.5
1,789,580	+		OH686_08790	0.25	+0.1
1,789,580	+		OH686_08790	0.25	+0.2
1,789,581	-		OH686_08790	0.25	-0.3
1,789,581	-		OH686_08790	0.25	-0.4
1,789,581	-		OH686_08790	0.25	-0.4
1,789,581	-		OH686_08790	0.25	+0.3
1,789,581	-		OH686_08790	0.25	+1.0
1,789,581	-		OH686_08790	0.25	+0.9
1,789,581	-		OH686_08790	0.25	+0.3
1,789,581	-		OH686_08790	0.25	-1.4
1,789,581	-		OH686_08790	0.25	-0.3
1,789,581	-		OH686_08790	0.25	+1.9
1,789,581	-		OH686_08790	0.25	-0.5
1,789,581	-		OH686_08790	0.25	+0.0
1,789,581	-		OH686_08790	0.25	-0.5
1,789,713	+		OH686_08790	0.43	+0.8
1,789,714	-		OH686_08790	0.43	-0.3
1,789,731	+		OH686_08790	0.46	-0.8
1,789,731	+		OH686_08790	0.46	+0.5
1,789,732	-		OH686_08790	0.46	+0.2
1,789,732	-		OH686_08790	0.46	-0.8
1,789,732	-		OH686_08790	0.46	+1.2
1,789,762	-		OH686_08790	0.50	-0.2
1,789,762	-		OH686_08790	0.50	-1.0
1,789,794	+		OH686_08790	0.54	-0.8
1,789,795	-		OH686_08790	0.54	-1.5
1,789,795	-		OH686_08790	0.54	-1.1
1,789,818	+		OH686_08790	0.58	+0.1
1,789,818	+		OH686_08790	0.58	+1.2
1,789,818	+		OH686_08790	0.58	+0.7
1,789,819	-		OH686_08790	0.58	+0.9
1,789,819	-		OH686_08790	0.58	-0.7
1,789,819	-		OH686_08790	0.58	+0.0
1,789,819	-		OH686_08790	0.58	+0.5
1,789,834	-		OH686_08790	0.60	-0.1
1,789,834	-		OH686_08790	0.60	+0.3
1,789,834	-		OH686_08790	0.60	-0.3
1,789,842	+		OH686_08790	0.61	+0.7
1,789,842	+		OH686_08790	0.61	-0.4
1,789,842	+		OH686_08790	0.61	+0.0
1,789,842	+		OH686_08790	0.61	-0.4
1,789,842	+		OH686_08790	0.61	+0.4
1,789,842	+		OH686_08790	0.61	-0.2
1,789,842	+		OH686_08790	0.61	+0.6
1,789,842	+		OH686_08790	0.61	+0.4
1,789,842	+		OH686_08790	0.61	+0.6
1,789,843	-		OH686_08790	0.61	+0.7
1,789,843	-		OH686_08790	0.61	-0.0
1,789,843	-		OH686_08790	0.61	-0.8
1,789,843	-		OH686_08790	0.61	+0.3
1,789,843	-		OH686_08790	0.61	-0.7
1,789,843	-		OH686_08790	0.61	+0.1
1,789,843	-		OH686_08790	0.61	-1.8
1,789,843	-		OH686_08790	0.61	+1.0
1,789,843	-		OH686_08790	0.61	-1.2
1,789,843	-		OH686_08790	0.61	-0.5