Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_02550 and OH686_02555 are separated by 37 nucleotides OH686_02555 and OH686_02560 are separated by 12 nucleotides OH686_02560 and OH686_02565 are separated by 12 nucleotides OH686_02565 and OH686_02570 are separated by 21 nucleotides
OH686_02550: OH686_02550 - Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly, at 542,562 to 544,037
_02550
OH686_02555: OH686_02555 - Flp pilus assembly protein CpaB, at 544,075 to 544,875
_02555
OH686_02560: OH686_02560 - Predicted ATPase with chaperone activity, associated with Flp pilus assembly, at 544,888 to 546,207
_02560
OH686_02565: OH686_02565 - hypothetical protein, at 546,220 to 546,765
_02565
OH686_02570: OH686_02570 - hypothetical protein, at 546,787 to 546,996
_02570
Position (kb) 544
545
546
547 Strain fitness (log2 ratio) -2
-1
0
1
2 at 543.895 kb on + strand at 543.895 kb on + strand at 543.896 kb on - strand at 543.896 kb on - strand at 543.896 kb on - strand at 544.054 kb on - strand at 544.054 kb on - strand at 544.077 kb on - strand at 544.077 kb on - strand at 544.077 kb on - strand at 544.077 kb on - strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.090 kb on + strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.091 kb on - strand at 544.337 kb on - strand, within OH686_02555 at 544.852 kb on + strand at 544.863 kb on + strand at 544.863 kb on + strand at 544.864 kb on - strand at 544.864 kb on - strand at 544.864 kb on - strand at 544.864 kb on - strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.916 kb on + strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.917 kb on - strand at 544.973 kb on + strand at 545.048 kb on + strand, within OH686_02560 at 545.048 kb on + strand, within OH686_02560 at 545.048 kb on + strand, within OH686_02560 at 545.049 kb on - strand, within OH686_02560 at 545.066 kb on + strand, within OH686_02560 at 545.066 kb on + strand, within OH686_02560 at 545.066 kb on + strand, within OH686_02560 at 545.067 kb on - strand, within OH686_02560 at 545.067 kb on - strand, within OH686_02560 at 545.067 kb on - strand, within OH686_02560 at 545.132 kb on + strand, within OH686_02560 at 545.132 kb on + strand, within OH686_02560 at 545.150 kb on + strand, within OH686_02560 at 545.150 kb on + strand, within OH686_02560 at 545.150 kb on + strand, within OH686_02560 at 545.151 kb on - strand, within OH686_02560 at 545.168 kb on + strand, within OH686_02560 at 545.168 kb on + strand, within OH686_02560 at 545.168 kb on + strand, within OH686_02560 at 545.168 kb on + strand, within OH686_02560 at 545.311 kb on + strand, within OH686_02560 at 545.423 kb on + strand, within OH686_02560 at 545.423 kb on + strand, within OH686_02560 at 545.423 kb on + strand, within OH686_02560 at 545.424 kb on - strand, within OH686_02560 at 545.579 kb on + strand, within OH686_02560 at 545.579 kb on + strand, within OH686_02560 at 545.579 kb on + strand, within OH686_02560 at 545.579 kb on + strand, within OH686_02560 at 545.579 kb on + strand, within OH686_02560 at 545.579 kb on + strand, within OH686_02560 at 545.579 kb on + strand, within OH686_02560 at 545.580 kb on - strand, within OH686_02560 at 545.580 kb on - strand, within OH686_02560 at 545.580 kb on - strand, within OH686_02560 at 545.580 kb on - strand, within OH686_02560 at 545.580 kb on - strand, within OH686_02560 at 545.580 kb on - strand, within OH686_02560 at 545.615 kb on + strand, within OH686_02560 at 545.615 kb on + strand, within OH686_02560 at 545.615 kb on + strand, within OH686_02560 at 545.616 kb on - strand, within OH686_02560 at 545.616 kb on - strand, within OH686_02560 at 545.616 kb on - strand, within OH686_02560 at 545.616 kb on - strand, within OH686_02560 at 545.664 kb on + strand, within OH686_02560 at 545.664 kb on + strand, within OH686_02560 at 545.665 kb on - strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.666 kb on + strand, within OH686_02560 at 545.667 kb on - strand, within OH686_02560 at 545.667 kb on - strand, within OH686_02560 at 545.667 kb on - strand, within OH686_02560 at 545.667 kb on - strand, within OH686_02560 at 545.667 kb on - strand, within OH686_02560 at 545.667 kb on - strand, within OH686_02560 at 545.667 kb on - strand, within OH686_02560 at 545.667 kb on - strand, within OH686_02560 at 545.693 kb on + strand, within OH686_02560 at 545.693 kb on + strand, within OH686_02560 at 545.693 kb on + strand, within OH686_02560 at 545.694 kb on - strand, within OH686_02560 at 545.694 kb on - strand, within OH686_02560 at 545.694 kb on - strand, within OH686_02560 at 545.814 kb on + strand, within OH686_02560 at 545.815 kb on - strand, within OH686_02560 at 545.874 kb on - strand, within OH686_02560 at 545.930 kb on + strand, within OH686_02560 at 546.203 kb on + strand at 546.203 kb on + strand at 546.203 kb on + strand at 546.203 kb on + strand at 546.203 kb on + strand at 546.203 kb on + strand at 546.203 kb on + strand at 546.203 kb on + strand at 546.203 kb on + strand at 546.203 kb on + strand at 546.204 kb on - strand at 546.204 kb on - strand at 546.204 kb on - strand at 546.204 kb on - strand at 546.204 kb on - strand at 546.204 kb on - strand at 546.204 kb on - strand at 546.204 kb on - strand at 546.204 kb on - strand at 546.204 kb on - strand at 546.204 kb on - strand at 546.233 kb on + strand at 546.234 kb on - strand at 546.381 kb on - strand, within OH686_02565 at 546.551 kb on + strand, within OH686_02565 at 546.551 kb on + strand, within OH686_02565 at 546.551 kb on + strand, within OH686_02565 at 546.551 kb on + strand, within OH686_02565 at 546.551 kb on + strand, within OH686_02565 at 546.551 kb on + strand, within OH686_02565 at 546.551 kb on + strand, within OH686_02565 at 546.551 kb on + strand, within OH686_02565 at 546.552 kb on - strand, within OH686_02565 at 546.552 kb on - strand, within OH686_02565 at 546.552 kb on - strand, within OH686_02565 at 546.552 kb on - strand, within OH686_02565 at 546.552 kb on - strand, within OH686_02565 at 546.626 kb on + strand, within OH686_02565 at 546.626 kb on + strand, within OH686_02565 at 546.626 kb on + strand, within OH686_02565 at 546.626 kb on + strand, within OH686_02565 at 546.626 kb on + strand, within OH686_02565 at 546.626 kb on + strand, within OH686_02565 at 546.627 kb on - strand, within OH686_02565 at 546.627 kb on - strand, within OH686_02565 at 546.627 kb on - strand, within OH686_02565 at 546.627 kb on - strand, within OH686_02565 at 546.694 kb on + strand, within OH686_02565 at 546.694 kb on + strand, within OH686_02565 at 546.694 kb on + strand, within OH686_02565 at 546.694 kb on + strand, within OH686_02565 at 546.694 kb on + strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.695 kb on - strand, within OH686_02565 at 546.727 kb on + strand at 546.727 kb on + strand at 546.727 kb on + strand at 546.727 kb on + strand at 546.727 kb on + strand at 546.727 kb on + strand at 546.727 kb on + strand at 546.728 kb on - strand at 546.728 kb on - strand at 546.728 kb on - strand at 546.728 kb on - strand at 546.816 kb on + strand, within OH686_02570 at 546.816 kb on + strand, within OH686_02570 at 546.817 kb on - strand, within OH686_02570 at 546.843 kb on + strand, within OH686_02570 at 546.843 kb on + strand, within OH686_02570 at 546.880 kb on + strand, within OH686_02570 at 546.880 kb on + strand, within OH686_02570 at 546.881 kb on - strand, within OH686_02570 at 546.881 kb on - strand, within OH686_02570 at 546.923 kb on + strand, within OH686_02570 at 546.923 kb on + strand, within OH686_02570 at 546.923 kb on + strand, within OH686_02570 at 546.923 kb on + strand, within OH686_02570 at 547.015 kb on + strand at 547.015 kb on + strand at 547.015 kb on + strand at 547.015 kb on + strand at 547.015 kb on + strand at 547.015 kb on + strand at 547.015 kb on + strand at 547.015 kb on + strand at 547.016 kb on - strand at 547.016 kb on - strand at 547.016 kb on - strand at 547.016 kb on - strand at 547.016 kb on - strand at 547.019 kb on + strand at 547.019 kb on + strand at 547.019 kb on + strand at 547.019 kb on + strand at 547.019 kb on + strand at 547.019 kb on + strand at 547.019 kb on + strand at 547.019 kb on + strand at 547.019 kb on + strand at 547.019 kb on + strand at 547.019 kb on + strand at 547.019 kb on + strand at 547.020 kb on - strand at 547.020 kb on - strand at 547.020 kb on - strand at 547.020 kb on - strand at 547.020 kb on - strand at 547.020 kb on - strand at 547.020 kb on - strand at 547.020 kb on - strand at 547.020 kb on - strand at 547.065 kb on - strand at 547.065 kb on - strand at 547.065 kb on - strand at 547.108 kb on + strand at 547.130 kb on + strand at 547.177 kb on - strand at 547.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 543,895 + -0.7 543,895 + +0.2 543,896 - -0.0 543,896 - -0.0 543,896 - -1.8 544,054 - +0.1 544,054 - -1.5 544,077 - -0.8 544,077 - +0.0 544,077 - +0.2 544,077 - +0.0 544,090 + -0.0 544,090 + +0.6 544,090 + -1.2 544,090 + +0.6 544,090 + -0.3 544,090 + +0.9 544,090 + -0.1 544,090 + -0.0 544,090 + -0.2 544,090 + -2.0 544,090 + +1.0 544,091 - +0.7 544,091 - -0.5 544,091 - -0.2 544,091 - +0.1 544,091 - +0.0 544,091 - -0.3 544,091 - -0.3 544,091 - +0.1 544,091 - +0.3 544,337 - OH686_02555 0.33 -0.1 544,852 + -0.1 544,863 + +0.1 544,863 + +0.8 544,864 - -0.2 544,864 - -0.7 544,864 - +0.3 544,864 - -0.1 544,916 + -0.2 544,916 + -0.7 544,916 + +0.1 544,916 + -0.1 544,916 + -1.8 544,916 + -0.5 544,916 + +0.4 544,916 + +0.1 544,917 - +0.6 544,917 - +0.3 544,917 - -0.0 544,917 - -0.1 544,917 - -0.7 544,917 - +0.1 544,917 - +1.5 544,917 - -0.3 544,917 - +0.9 544,917 - +0.5 544,973 + -0.5 545,048 + OH686_02560 0.12 +0.1 545,048 + OH686_02560 0.12 -0.6 545,048 + OH686_02560 0.12 -0.4 545,049 - OH686_02560 0.12 +0.3 545,066 + OH686_02560 0.13 -0.4 545,066 + OH686_02560 0.13 -0.4 545,066 + OH686_02560 0.13 -1.4 545,067 - OH686_02560 0.14 -1.0 545,067 - OH686_02560 0.14 +0.0 545,067 - OH686_02560 0.14 -0.1 545,132 + OH686_02560 0.18 +2.0 545,132 + OH686_02560 0.18 +0.1 545,150 + OH686_02560 0.20 +0.6 545,150 + OH686_02560 0.20 +0.3 545,150 + OH686_02560 0.20 -0.0 545,151 - OH686_02560 0.20 +0.1 545,168 + OH686_02560 0.21 -0.3 545,168 + OH686_02560 0.21 +0.6 545,168 + OH686_02560 0.21 -0.9 545,168 + OH686_02560 0.21 -0.5 545,311 + OH686_02560 0.32 -0.2 545,423 + OH686_02560 0.41 -0.2 545,423 + OH686_02560 0.41 +1.4 545,423 + OH686_02560 0.41 -0.0 545,424 - OH686_02560 0.41 +0.1 545,579 + OH686_02560 0.52 -0.4 545,579 + OH686_02560 0.52 +1.1 545,579 + OH686_02560 0.52 -0.0 545,579 + OH686_02560 0.52 -1.1 545,579 + OH686_02560 0.52 -0.1 545,579 + OH686_02560 0.52 -0.3 545,579 + OH686_02560 0.52 +0.2 545,580 - OH686_02560 0.52 +0.6 545,580 - OH686_02560 0.52 +0.4 545,580 - OH686_02560 0.52 -0.5 545,580 - OH686_02560 0.52 +0.2 545,580 - OH686_02560 0.52 -0.6 545,580 - OH686_02560 0.52 -0.3 545,615 + OH686_02560 0.55 -1.1 545,615 + OH686_02560 0.55 +1.5 545,615 + OH686_02560 0.55 -1.3 545,616 - OH686_02560 0.55 +0.2 545,616 - OH686_02560 0.55 +0.3 545,616 - OH686_02560 0.55 -0.3 545,616 - OH686_02560 0.55 +0.5 545,664 + OH686_02560 0.59 +0.5 545,664 + OH686_02560 0.59 -0.6 545,665 - OH686_02560 0.59 -0.8 545,666 + OH686_02560 0.59 -0.7 545,666 + OH686_02560 0.59 +0.4 545,666 + OH686_02560 0.59 -2.1 545,666 + OH686_02560 0.59 +0.3 545,666 + OH686_02560 0.59 +0.8 545,666 + OH686_02560 0.59 -0.3 545,666 + OH686_02560 0.59 -0.3 545,666 + OH686_02560 0.59 +0.4 545,666 + OH686_02560 0.59 +1.1 545,666 + OH686_02560 0.59 -0.3 545,666 + OH686_02560 0.59 -0.1 545,666 + OH686_02560 0.59 -0.5 545,666 + OH686_02560 0.59 -1.1 545,666 + OH686_02560 0.59 -0.3 545,667 - OH686_02560 0.59 -1.5 545,667 - OH686_02560 0.59 -1.0 545,667 - OH686_02560 0.59 -0.9 545,667 - OH686_02560 0.59 +0.9 545,667 - OH686_02560 0.59 +0.5 545,667 - OH686_02560 0.59 +0.3 545,667 - OH686_02560 0.59 -0.0 545,667 - OH686_02560 0.59 +0.2 545,693 + OH686_02560 0.61 -0.6 545,693 + OH686_02560 0.61 +0.7 545,693 + OH686_02560 0.61 +0.2 545,694 - OH686_02560 0.61 -0.5 545,694 - OH686_02560 0.61 +0.3 545,694 - OH686_02560 0.61 -0.2 545,814 + OH686_02560 0.70 -0.1 545,815 - OH686_02560 0.70 -0.4 545,874 - OH686_02560 0.75 -0.2 545,930 + OH686_02560 0.79 -0.4 546,203 + -0.2 546,203 + -0.3 546,203 + +0.2 546,203 + -0.0 546,203 + -0.8 546,203 + -0.2 546,203 + +0.2 546,203 + +0.0 546,203 + +1.0 546,203 + -0.5 546,204 - +0.5 546,204 - +0.1 546,204 - +0.2 546,204 - +0.5 546,204 - +0.1 546,204 - +0.1 546,204 - -0.2 546,204 - +0.3 546,204 - +0.5 546,204 - -0.5 546,204 - -1.0 546,233 + +0.5 546,234 - -0.6 546,381 - OH686_02565 0.29 -0.2 546,551 + OH686_02565 0.61 -0.0 546,551 + OH686_02565 0.61 -0.7 546,551 + OH686_02565 0.61 -0.2 546,551 + OH686_02565 0.61 -0.2 546,551 + OH686_02565 0.61 -1.0 546,551 + OH686_02565 0.61 -0.3 546,551 + OH686_02565 0.61 -0.4 546,551 + OH686_02565 0.61 +0.8 546,552 - OH686_02565 0.61 +0.5 546,552 - OH686_02565 0.61 +1.0 546,552 - OH686_02565 0.61 +0.5 546,552 - OH686_02565 0.61 +0.2 546,552 - OH686_02565 0.61 -0.3 546,626 + OH686_02565 0.74 -0.1 546,626 + OH686_02565 0.74 -0.4 546,626 + OH686_02565 0.74 +0.2 546,626 + OH686_02565 0.74 -0.5 546,626 + OH686_02565 0.74 -0.1 546,626 + OH686_02565 0.74 -0.0 546,627 - OH686_02565 0.75 -0.2 546,627 - OH686_02565 0.75 +0.2 546,627 - OH686_02565 0.75 +0.7 546,627 - OH686_02565 0.75 -0.6 546,694 + OH686_02565 0.87 +0.6 546,694 + OH686_02565 0.87 -0.5 546,694 + OH686_02565 0.87 +0.6 546,694 + OH686_02565 0.87 -0.3 546,694 + OH686_02565 0.87 -0.0 546,695 - OH686_02565 0.87 -1.4 546,695 - OH686_02565 0.87 -0.1 546,695 - OH686_02565 0.87 -0.1 546,695 - OH686_02565 0.87 -0.2 546,695 - OH686_02565 0.87 +0.0 546,695 - OH686_02565 0.87 +0.7 546,695 - OH686_02565 0.87 +0.5 546,695 - OH686_02565 0.87 +1.5 546,695 - OH686_02565 0.87 +0.0 546,695 - OH686_02565 0.87 -0.5 546,695 - OH686_02565 0.87 -0.0 546,695 - OH686_02565 0.87 -0.1 546,695 - OH686_02565 0.87 +0.1 546,727 + -0.2 546,727 + -0.3 546,727 + -0.0 546,727 + -0.1 546,727 + -1.6 546,727 + +0.1 546,727 + -0.4 546,728 - +0.2 546,728 - -0.1 546,728 - -0.5 546,728 - -1.6 546,816 + OH686_02570 0.14 +0.2 546,816 + OH686_02570 0.14 -0.4 546,817 - OH686_02570 0.14 +0.3 546,843 + OH686_02570 0.27 +0.4 546,843 + OH686_02570 0.27 +0.1 546,880 + OH686_02570 0.44 +0.4 546,880 + OH686_02570 0.44 -0.7 546,881 - OH686_02570 0.45 -0.4 546,881 - OH686_02570 0.45 +0.2 546,923 + OH686_02570 0.65 -0.1 546,923 + OH686_02570 0.65 +0.9 546,923 + OH686_02570 0.65 +1.4 546,923 + OH686_02570 0.65 +0.3 547,015 + -0.7 547,015 + -0.6 547,015 + +0.2 547,015 + -0.2 547,015 + +1.1 547,015 + +0.4 547,015 + -0.5 547,015 + +0.5 547,016 - -0.2 547,016 - -0.6 547,016 - -0.5 547,016 - -0.3 547,016 - -0.5 547,019 + +0.1 547,019 + +1.1 547,019 + +0.5 547,019 + +0.9 547,019 + -0.9 547,019 + +0.1 547,019 + -0.4 547,019 + +0.6 547,019 + +0.6 547,019 + -1.3 547,019 + +0.4 547,019 + -0.7 547,020 - -1.9 547,020 - +0.4 547,020 - -0.4 547,020 - -0.7 547,020 - +0.1 547,020 - -0.5 547,020 - -0.7 547,020 - +0.3 547,020 - +0.2 547,065 - +0.1 547,065 - -0.1 547,065 - -0.7 547,108 + -0.3 547,130 + +0.2 547,177 - -0.4 547,189 - +0.6
Or see this region's nucleotide sequence