Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0735

Experiment: m.b. copper (II) chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0734 and Echvi_0735 are separated by 11 nucleotidesEchvi_0735 and Echvi_0736 overlap by 20 nucleotides Echvi_0734: Echvi_0734 - Phosphoribosylaminoimidazole (AIR) synthetase, at 822,480 to 823,643 _0734 Echvi_0735: Echvi_0735 - Neutral/alkaline non-lysosomal ceramidase., at 823,655 to 824,980 _0735 Echvi_0736: Echvi_0736 - hypothetical protein, at 824,961 to 825,338 _0736 Position (kb) 823 824 825Strain fitness (log2 ratio) -1 0 1 2 3at 825.034 kb on + strand, within Echvi_0736at 825.045 kb on + strand, within Echvi_0736at 825.065 kb on + strand, within Echvi_0736at 825.065 kb on + strand, within Echvi_0736at 825.065 kb on + strand, within Echvi_0736at 825.065 kb on + strand, within Echvi_0736at 825.065 kb on + strand, within Echvi_0736at 825.065 kb on + strand, within Echvi_0736at 825.066 kb on - strand, within Echvi_0736at 825.067 kb on + strand, within Echvi_0736at 825.068 kb on - strand, within Echvi_0736at 825.140 kb on - strand, within Echvi_0736at 825.197 kb on + strand, within Echvi_0736at 825.197 kb on + strand, within Echvi_0736at 825.209 kb on + strand, within Echvi_0736at 825.209 kb on + strand, within Echvi_0736at 825.212 kb on + strand, within Echvi_0736at 825.213 kb on - strand, within Echvi_0736at 825.213 kb on - strand, within Echvi_0736at 825.222 kb on + strand, within Echvi_0736at 825.222 kb on + strand, within Echvi_0736at 825.343 kb on + strandat 825.344 kb on - strandat 825.344 kb on - strandat 825.347 kb on + strandat 825.351 kb on + strandat 825.385 kb on + strandat 825.386 kb on - strandat 825.395 kb on + strandat 825.395 kb on + strandat 825.395 kb on + strandat 825.395 kb on + strandat 825.396 kb on - strandat 825.398 kb on + strandat 825.398 kb on + strandat 825.399 kb on - strandat 825.442 kb on + strandat 825.497 kb on + strandat 825.498 kb on - strandat 825.498 kb on - strandat 825.568 kb on + strandat 825.569 kb on - strandat 825.569 kb on - strandat 825.574 kb on + strandat 825.574 kb on + strandat 825.585 kb on - strandat 825.594 kb on - strandat 825.594 kb on - strandat 825.703 kb on + strandat 825.728 kb on - strandat 825.728 kb on - strandat 825.748 kb on - strandat 825.808 kb on + strandat 825.808 kb on + strandat 825.808 kb on + strandat 825.810 kb on + strandat 825.810 kb on + strandat 825.846 kb on + strandat 825.846 kb on + strandat 825.847 kb on - strandat 825.848 kb on + strandat 825.848 kb on + strandat 825.849 kb on - strandat 825.902 kb on - strandat 825.902 kb on - strandat 825.902 kb on - strandat 825.973 kb on + strandat 825.973 kb on + strandat 825.975 kb on + strandat 825.975 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.5 mM
remove
825,034 + Echvi_0736 0.19 -0.0
825,045 + Echvi_0736 0.22 -0.8
825,065 + Echvi_0736 0.28 -0.6
825,065 + Echvi_0736 0.28 -0.5
825,065 + Echvi_0736 0.28 +0.5
825,065 + Echvi_0736 0.28 +1.2
825,065 + Echvi_0736 0.28 -0.7
825,065 + Echvi_0736 0.28 -0.3
825,066 - Echvi_0736 0.28 -0.8
825,067 + Echvi_0736 0.28 -0.0
825,068 - Echvi_0736 0.28 -0.3
825,140 - Echvi_0736 0.47 -0.7
825,197 + Echvi_0736 0.62 +0.6
825,197 + Echvi_0736 0.62 +0.1
825,209 + Echvi_0736 0.66 -0.6
825,209 + Echvi_0736 0.66 -0.1
825,212 + Echvi_0736 0.66 -0.6
825,213 - Echvi_0736 0.67 +1.7
825,213 - Echvi_0736 0.67 -1.6
825,222 + Echvi_0736 0.69 +0.0
825,222 + Echvi_0736 0.69 +0.8
825,343 + -0.0
825,344 - +0.2
825,344 - +2.8
825,347 + -0.5
825,351 + +0.1
825,385 + -0.1
825,386 - +1.4
825,395 + +1.3
825,395 + +1.3
825,395 + +1.3
825,395 + +1.4
825,396 - +0.2
825,398 + +1.8
825,398 + +0.2
825,399 - -1.7
825,442 + +0.5
825,497 + +0.3
825,498 - +0.2
825,498 - +0.4
825,568 + -0.0
825,569 - -1.1
825,569 - -0.5
825,574 + +1.0
825,574 + -1.4
825,585 - -0.1
825,594 - +0.4
825,594 - +3.6
825,703 + +0.5
825,728 - -0.5
825,728 - -1.0
825,748 - -1.1
825,808 + -1.0
825,808 + -0.7
825,808 + +0.5
825,810 + +0.1
825,810 + -0.7
825,846 + +0.0
825,846 + +0.4
825,847 - -0.8
825,848 + -0.9
825,848 + -1.3
825,849 - -0.3
825,902 - +0.6
825,902 - -0.9
825,902 - +1.3
825,973 + -1.5
825,973 + -0.0
825,975 + -1.5
825,975 + +0.5

Or see this region's nucleotide sequence