Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19170

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19160 and CA264_19165 are separated by 453 nucleotidesCA264_19165 and CA264_19170 are separated by 94 nucleotidesCA264_19170 and CA264_19175 are separated by 111 nucleotides CA264_19160: CA264_19160 - GNAT family N-acetyltransferase, at 4,452,128 to 4,452,613 _19160 CA264_19165: CA264_19165 - hypothetical protein, at 4,453,067 to 4,453,330 _19165 CA264_19170: CA264_19170 - hypothetical protein, at 4,453,425 to 4,453,634 _19170 CA264_19175: CA264_19175 - hypothetical protein, at 4,453,746 to 4,454,933 _19175 Position (kb) 4453 4454Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4452.434 kb on + strand, within CA264_19160at 4452.531 kb on + strand, within CA264_19160at 4452.532 kb on - strand, within CA264_19160at 4452.584 kb on - strandat 4452.590 kb on + strandat 4452.590 kb on + strandat 4452.599 kb on + strandat 4452.600 kb on - strandat 4452.600 kb on - strandat 4452.657 kb on - strandat 4452.660 kb on + strandat 4452.660 kb on + strandat 4452.660 kb on + strandat 4452.661 kb on - strandat 4452.661 kb on - strandat 4452.661 kb on - strandat 4452.661 kb on - strandat 4452.661 kb on - strandat 4452.665 kb on + strandat 4452.666 kb on - strandat 4452.666 kb on - strandat 4452.666 kb on - strandat 4452.666 kb on - strandat 4452.728 kb on + strandat 4452.728 kb on + strandat 4452.729 kb on - strandat 4452.729 kb on - strandat 4452.765 kb on - strandat 4452.770 kb on + strandat 4452.775 kb on + strandat 4452.775 kb on + strandat 4452.775 kb on + strandat 4452.776 kb on - strandat 4452.793 kb on + strandat 4452.793 kb on + strandat 4452.842 kb on + strandat 4453.058 kb on - strandat 4453.068 kb on + strandat 4453.069 kb on - strandat 4453.069 kb on - strandat 4453.069 kb on - strandat 4453.383 kb on - strandat 4453.390 kb on + strandat 4453.390 kb on + strandat 4453.391 kb on - strandat 4453.391 kb on - strandat 4453.427 kb on - strandat 4453.430 kb on - strandat 4453.430 kb on - strandat 4453.634 kb on + strandat 4453.641 kb on + strandat 4453.642 kb on - strandat 4453.646 kb on + strandat 4453.655 kb on - strandat 4453.655 kb on - strandat 4453.662 kb on - strandat 4453.662 kb on - strandat 4453.690 kb on - strandat 4453.690 kb on - strandat 4453.690 kb on - strandat 4453.707 kb on + strandat 4453.707 kb on + strandat 4453.708 kb on - strandat 4453.708 kb on - strandat 4453.727 kb on + strandat 4453.728 kb on - strandat 4453.807 kb on + strandat 4453.827 kb on - strandat 4453.855 kb on - strandat 4453.997 kb on - strand, within CA264_19175at 4454.066 kb on + strand, within CA264_19175at 4454.067 kb on - strand, within CA264_19175at 4454.089 kb on + strand, within CA264_19175at 4454.114 kb on - strand, within CA264_19175at 4454.153 kb on + strand, within CA264_19175at 4454.154 kb on - strand, within CA264_19175at 4454.239 kb on + strand, within CA264_19175at 4454.239 kb on + strand, within CA264_19175at 4454.244 kb on + strand, within CA264_19175at 4454.253 kb on + strand, within CA264_19175at 4454.281 kb on - strand, within CA264_19175at 4454.462 kb on - strand, within CA264_19175at 4454.557 kb on + strand, within CA264_19175at 4454.557 kb on + strand, within CA264_19175at 4454.558 kb on - strand, within CA264_19175at 4454.566 kb on - strand, within CA264_19175

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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4,452,434 + CA264_19160 0.63 -1.8
4,452,531 + CA264_19160 0.83 -0.8
4,452,532 - CA264_19160 0.83 +0.3
4,452,584 - -0.4
4,452,590 + +2.3
4,452,590 + +0.1
4,452,599 + +0.4
4,452,600 - -0.5
4,452,600 - -1.0
4,452,657 - -2.3
4,452,660 + -2.3
4,452,660 + -0.0
4,452,660 + -0.6
4,452,661 - -0.1
4,452,661 - +0.4
4,452,661 - +0.0
4,452,661 - -0.4
4,452,661 - -0.5
4,452,665 + -0.3
4,452,666 - -0.3
4,452,666 - +0.2
4,452,666 - -0.2
4,452,666 - -0.1
4,452,728 + +2.9
4,452,728 + -0.7
4,452,729 - -0.1
4,452,729 - -0.1
4,452,765 - -0.4
4,452,770 + -0.3
4,452,775 + +0.9
4,452,775 + +0.3
4,452,775 + -1.1
4,452,776 - +0.6
4,452,793 + -0.1
4,452,793 + -0.2
4,452,842 + -0.1
4,453,058 - -2.7
4,453,068 + +0.5
4,453,069 - -1.4
4,453,069 - +0.6
4,453,069 - -2.0
4,453,383 - -0.5
4,453,390 + -0.1
4,453,390 + +1.0
4,453,391 - +0.1
4,453,391 - +1.2
4,453,427 - -0.8
4,453,430 - +0.2
4,453,430 - +1.6
4,453,634 + +1.3
4,453,641 + -0.2
4,453,642 - -0.4
4,453,646 + +1.3
4,453,655 - -0.4
4,453,655 - -0.7
4,453,662 - -0.1
4,453,662 - +0.6
4,453,690 - -1.4
4,453,690 - +0.6
4,453,690 - -0.4
4,453,707 + -0.8
4,453,707 + -0.6
4,453,708 - -0.6
4,453,708 - -0.7
4,453,727 + +0.3
4,453,728 - +0.2
4,453,807 + +0.3
4,453,827 - +0.9
4,453,855 - -0.4
4,453,997 - CA264_19175 0.21 +0.6
4,454,066 + CA264_19175 0.27 +2.0
4,454,067 - CA264_19175 0.27 +0.6
4,454,089 + CA264_19175 0.29 +0.8
4,454,114 - CA264_19175 0.31 +0.3
4,454,153 + CA264_19175 0.34 +0.2
4,454,154 - CA264_19175 0.34 +2.0
4,454,239 + CA264_19175 0.41 +0.7
4,454,239 + CA264_19175 0.41 +1.7
4,454,244 + CA264_19175 0.42 -0.5
4,454,253 + CA264_19175 0.43 +0.5
4,454,281 - CA264_19175 0.45 +0.8
4,454,462 - CA264_19175 0.60 +0.5
4,454,557 + CA264_19175 0.68 +1.0
4,454,557 + CA264_19175 0.68 +1.2
4,454,558 - CA264_19175 0.68 +0.2
4,454,566 - CA264_19175 0.69 -0.4

Or see this region's nucleotide sequence